Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95788 | Canola | cytosol | 17.88 | 74.02 |
| Bra022281.1-P | Field mustard | cytosol | 61.34 | 69.28 |
| KRH27784 | Soybean | plastid | 68.76 | 68.53 |
| AT3G18110.1 | Thale cress | plastid | 65.11 | 67.01 |
| Solyc03g096830.2.1 | Tomato | plastid | 66.53 | 66.85 |
| GSMUA_Achr10P... | Banana | plastid | 54.93 | 58.99 |
| HORVU7Hr1G033940.1 | Barley | cytosol | 50.0 | 58.9 |
| Os06t0199100-01 | Rice | cytosol | 50.0 | 57.76 |
| KXG19540 | Sorghum | plastid | 54.66 | 56.02 |
| Zm00001d045014_P003 | Maize | plastid | 54.12 | 55.31 |
| TraesCS7A01G161500.1 | Wheat | plastid | 53.71 | 55.01 |
| TraesCS7D01G162800.1 | Wheat | plastid | 53.64 | 54.9 |
| TraesCS7B01G066600.1 | Wheat | plastid | 53.31 | 54.67 |
| CDX95789 | Canola | cytosol | 23.75 | 47.0 |
| CDX92197 | Canola | cytosol | 3.17 | 30.72 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 11.74 | 19.33 |
| VIT_16s0039g02130.t01 | Wine grape | plastid | 12.75 | 17.65 |
| PGSC0003DMT400001470 | Potato | nucleus | 1.89 | 15.91 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100252831 | wikigene:100252831 | MapMan:35.1 | EMBL:AM437589 | ProteinID:CAN76112 |
| ProteinID:CAN76112.1 | ProteinID:CCB50622 | ProteinID:CCB50622.1 | UniProt:F6HEH6 | EMBL:FN595750 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 |
| GO:GO:0004553 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005975 | GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 |
| GO:GO:0090305 | InterPro:Glyco_hydro_5_CS | InterPro:IPR002885 | InterPro:IPR011990 | EntrezGene:LOC100252831 | wikigene:LOC100252831 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFAM:PF13812 | ScanProsite:PS00659 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF556 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00021095FC |
| ArrayExpress:VIT_16s0039g02570 | EnsemblPlantsGene:VIT_16s0039g02570 | EnsemblPlants:VIT_16s0039g02570.t01 | RefSeq:XP_002275236 | RefSeq:XP_002275236.2 | SEG:seg |
Description
No Description!
Coordinates
chr16:+:2804394..2810171
Molecular Weight (calculated)
167140.0 Da
IEP (calculated)
7.577
GRAVY (calculated)
-0.197
Length
1482 amino acids
Sequence
(BLAST)
(BLAST)
0001: MACAGVLAFS SAPKNSDPSS SSSSSKVCRS STATVSCVSH CVCSAASTST ATEQANLQKF SYSRASPSVR WPHLKLTENY PPSQRPTHVV EDVGLLEDTH
0101: DSLGKEEIRE IGEAGFGEGL ELGDETQDFL GKTSKNRVKK MTKLALKRAK DWRQRVQFLT DRILGLKSEE FVADVLDDRK VQMTPTDFCF VVKWVGQSSW
0201: QRALEVYEWL NLRHWYSPNA RMLATILSVL GKANQEALAV EIFARAEAAS GNTVQVYNAM MGVYARTGRF TKVQELLDLM RSRGCEPDLV SFNTLINARL
0301: KSGTMVTNLA IELLNEVRRS GIQPDIITYN TLISACSRES NLEEAVKVYN DMVAHRCQPD LWTYNAMISV YGRCGMSREA GRLFKDLESK GFLPDAVTYN
0401: SLLYAFAREG NVDKVKEICE DMVKMGFGKD EMTYNTIIHM YGKRGQHDLA FQLYSDMKLS GRSPDAVTYT VLIDSLGKAN MIKEAAEVMS EMLNARVKPT
0501: LRTFSALICG YAKAGKRVEA EETFDCMLRS GIKPDHLAYS VMLDILLRFN ESGKAMKLYQ EMVLHSFKPD HALYEVMLRV LGKENREEDV HKVVKDMEEL
0601: CGMNSQVICS ILVKGECFDH AANMLRLAIS QGCELDRENL LSILGSYGSS GRHLEARELL DFLREHSSGS HQLINEALII MLCKAHQLGD ALREYGKARD
0701: FGLFCGSFTM YESLLLCCEE NELFAEASQI FSDMRFYGVE PSDHLYRSMV VTYCKMGFPE TAHYLIDQAE EKGLLFDDVS IHTGVIEAYG KLKLWQKAES
0801: LVGSLRQKCT MVDRKVWNAL IHAYAASGCY ERARAIFNTM MRDGPSPTVD SVNGLMQALI VDGRLDELYV VIQELQDMGF KISKSSITLM LDAFAHAGNI
0901: FEVKKIYQGM KAAGYFPTMH LYRIMIGLLA KGKRVRDVEA MVSEMEVARF KPDLSIWNSV LKLYTGIGDF KKTGQVYQLI QEAGLKPDED TYNTLILMYC
1001: RDRRPEEGLS LMHEMRRVGL EPKLDTYKSL ISAFGKLQMV EQAEELFEGL LSKECKLDRS FYHIMMKMFR NSGNHSKAEK LLGVMKEAGV EPTIATMHLL
1101: MVSYSGSGQP EEAEKVLDNL KVEGLPLSTL PYSSVIDAYL KNGDHNVAIQ KLMEMKKDGL EPDHRIWTCF VRAASLSQHT SEAIVLLKAL RDTGFDLPIR
1201: LLTEKSDSLV SEVDNCLEKL GPLEDNAAFN FVNALEDLLW AFELRATASW VFQLAVKRSI YRHDVFRVAE KDWGADFRKM SAGSALVGLT LWLDHMQAKY
1301: FYFWQDASLQ GYPLSPKSVV LITGTAEYNM VSLNSTLKAF LWEMGSPFLP CKTRSGLLVA KAHSLRMWLK DSSFCLDLEL KDAPSLPESN SMQLMEGCFL
1401: RRGLVPAFKD ITERLGDVRP KKFARLALLP DEKRDKVIRA DIEGGKEKLE KMKKKVGVKR RRKLVRRKFI RGVVLSKPVE IR
0101: DSLGKEEIRE IGEAGFGEGL ELGDETQDFL GKTSKNRVKK MTKLALKRAK DWRQRVQFLT DRILGLKSEE FVADVLDDRK VQMTPTDFCF VVKWVGQSSW
0201: QRALEVYEWL NLRHWYSPNA RMLATILSVL GKANQEALAV EIFARAEAAS GNTVQVYNAM MGVYARTGRF TKVQELLDLM RSRGCEPDLV SFNTLINARL
0301: KSGTMVTNLA IELLNEVRRS GIQPDIITYN TLISACSRES NLEEAVKVYN DMVAHRCQPD LWTYNAMISV YGRCGMSREA GRLFKDLESK GFLPDAVTYN
0401: SLLYAFAREG NVDKVKEICE DMVKMGFGKD EMTYNTIIHM YGKRGQHDLA FQLYSDMKLS GRSPDAVTYT VLIDSLGKAN MIKEAAEVMS EMLNARVKPT
0501: LRTFSALICG YAKAGKRVEA EETFDCMLRS GIKPDHLAYS VMLDILLRFN ESGKAMKLYQ EMVLHSFKPD HALYEVMLRV LGKENREEDV HKVVKDMEEL
0601: CGMNSQVICS ILVKGECFDH AANMLRLAIS QGCELDRENL LSILGSYGSS GRHLEARELL DFLREHSSGS HQLINEALII MLCKAHQLGD ALREYGKARD
0701: FGLFCGSFTM YESLLLCCEE NELFAEASQI FSDMRFYGVE PSDHLYRSMV VTYCKMGFPE TAHYLIDQAE EKGLLFDDVS IHTGVIEAYG KLKLWQKAES
0801: LVGSLRQKCT MVDRKVWNAL IHAYAASGCY ERARAIFNTM MRDGPSPTVD SVNGLMQALI VDGRLDELYV VIQELQDMGF KISKSSITLM LDAFAHAGNI
0901: FEVKKIYQGM KAAGYFPTMH LYRIMIGLLA KGKRVRDVEA MVSEMEVARF KPDLSIWNSV LKLYTGIGDF KKTGQVYQLI QEAGLKPDED TYNTLILMYC
1001: RDRRPEEGLS LMHEMRRVGL EPKLDTYKSL ISAFGKLQMV EQAEELFEGL LSKECKLDRS FYHIMMKMFR NSGNHSKAEK LLGVMKEAGV EPTIATMHLL
1101: MVSYSGSGQP EEAEKVLDNL KVEGLPLSTL PYSSVIDAYL KNGDHNVAIQ KLMEMKKDGL EPDHRIWTCF VRAASLSQHT SEAIVLLKAL RDTGFDLPIR
1201: LLTEKSDSLV SEVDNCLEKL GPLEDNAAFN FVNALEDLLW AFELRATASW VFQLAVKRSI YRHDVFRVAE KDWGADFRKM SAGSALVGLT LWLDHMQAKY
1301: FYFWQDASLQ GYPLSPKSVV LITGTAEYNM VSLNSTLKAF LWEMGSPFLP CKTRSGLLVA KAHSLRMWLK DSSFCLDLEL KDAPSLPESN SMQLMEGCFL
1401: RRGLVPAFKD ITERLGDVRP KKFARLALLP DEKRDKVIRA DIEGGKEKLE KMKKKVGVKR RRKLVRRKFI RGVVLSKPVE IR
0001: MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Arabidopsis Description
EMB1270Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.