Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19540 | Sorghum | plastid | 93.38 | 93.64 |
| HORVU7Hr1G033940.1 | Barley | cytosol | 67.79 | 78.14 |
| Os06t0199100-01 | Rice | cytosol | 67.59 | 76.38 |
| TraesCS7D01G162800.1 | Wheat | plastid | 75.52 | 75.62 |
| TraesCS7A01G161500.1 | Wheat | plastid | 75.38 | 75.54 |
| TraesCS7B01G066600.1 | Wheat | plastid | 75.17 | 75.43 |
| GSMUA_Achr10P... | Banana | plastid | 54.41 | 57.17 |
| CDX95788 | Canola | cytosol | 14.07 | 56.98 |
| Bra022281.1-P | Field mustard | cytosol | 49.1 | 54.27 |
| VIT_16s0039g02570.t01 | Wine grape | plastid | 55.31 | 54.12 |
| AT3G18110.1 | Thale cress | plastid | 52.07 | 52.43 |
| KRH27784 | Soybean | plastid | 53.38 | 52.05 |
| Solyc03g096830.2.1 | Tomato | plastid | 51.86 | 50.98 |
| CDX95789 | Canola | cytosol | 20.69 | 40.05 |
| CDX92197 | Canola | cytosol | 2.69 | 25.49 |
| Zm00001d024409_P001 | Maize | plastid | 12.48 | 18.83 |
| PGSC0003DMT400001470 | Potato | nucleus | 2.14 | 17.61 |
| Zm00001d045550_P002 | Maize | plastid | 12.34 | 17.13 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A1D6NST8 | ProteinID:AQL01310.1 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009793 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 |
| PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF556 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000844E3E0 | EnsemblPlantsGene:Zm00001d045014 | EnsemblPlants:Zm00001d045014_P003 |
| EnsemblPlants:Zm00001d045014_T003 | SEG:seg | : | : | : | : |
Description
chloroplast RNA splicing3 chloroplast RNA splicing4
Coordinates
chr9:-:10221137..10230897
Molecular Weight (calculated)
162341.0 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.123
Length
1450 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSMTVTSSP LPFLSSSSSL TCHLRRAGTA TATAASSASE DFDYPLADPS LRWPHLRFPY LPAPRFPATV AAAPPVPARP PQEVEDPVAT SGSASSLVEP
0101: LDARAHRGRV KKLSKLALRR AQDWRARVAG LADAVLELPP GAPVDDVLDG ARASPDEVAF VVRAVGESSW RRALDAFEWL ARSSAPASRA VAVVLGVLGR
0201: ARQDSIAEEV FLRFAGEGAT VQVFNAMMGV YARSGRFDDA RQLLDTMHDR GIDPDLVSFN TLINARSKSG CLAAGVALDL LFEVRQSGLR PDVITYNTLI
0301: SACSQSSNLE DAVTVFEDMI ASECRPDLWT YNAMVSVHGR CGKAEEAERL FRELVEKGFM PDAITYNSLL YAFAKEGNVD KVEHTCEQLV KAGFKKNEIT
0401: YNTMIHMYGK MGRLDLAVGL YDEMRAMGCT PDAVTYTVMI DSLGKMNRIA EAGKVLEDMT DAGLKPTLIA FSALICAYAK GGRRADAENT FDCMIASGVK
0501: PDRLAYLVML DVFARSGDTE KMLCLYRKMM NDNYRPDDDM YQVLLVALAK EDKCEEIEEV IQDMELLCRM NLGIISTMLI KARCVSQGAK LLKKACLQGY
0601: KPDIKSLRSI MNAYVMTEKH EEGLSLLECI CEHVSFSQDL ISECSIMLLC RKQTSISAYE QYSQRLMLKY PGQNCNLYEY LITCLIEAEF FSEACQVFCD
0701: MQFIGIEASK SIYESIISTY CKLGFPETAH RLMDDALQSG IPLNILSCRV IIIEAYGKIK LWQQAEILVK GLRQASGIDR RIWNALIHAY AESGLYEKAR
0801: AVFDNMIKTG PLPTVDSVNG MMRALIVDGR LDELYVVVEE LQDMNFKISK STVLLLLDAF AKAGDVFEVM KIYNGMKAAG YLPNMHLYRS MISLLCHHNR
0901: FRDVELMIAE MEGAGFKPDL AILNALLNMY TAAGNFDRTT QVYRSILEAG LEPDEDTYNT LIVMYCRSFR PEEGFTLLNE MGKRGLTPKL QSYKSLLAAS
1001: AKAELREQAD QIFEEMRSKS YQLNRSIYHM MMKIYRNAGN HSKAENLLAV MKEDGIEPTI ATMHILMTSY GTAGQPREAE NVLNNLKSSS LEVSTLPYST
1101: VFDAYLKNGD YNHGTTKLLE MKRDGVEPDH QVWTCFIRAA SLCEQTADAI LLLKSLQDCG FDLPIRLLTE RTPSLLSEIA NYLEELEALE DSAALNFVNA
1201: VEDLLWAFEC RATASRIFQL AVERSIYRDN VFRYPWQSLY RKISFEVVVA QKDWGADFRK LSAGAALVGL TLWLDHMQDA SLQGSPESPK SVVLVTGEGE
1301: YNMVSLRKTI RAYLLEMGSP FLPCRARSGR FVVKDYSLKM WLKDSPFCMD LELKDAPAHP KLNSMKLIEG YFMRAGFVSA FKDIHERLGE VWPKKFSRLA
1401: LLSEECRDEV IKADIQGRKE KLERMKKKGI VTARKSKTRA RRGKFVRQQK
0101: LDARAHRGRV KKLSKLALRR AQDWRARVAG LADAVLELPP GAPVDDVLDG ARASPDEVAF VVRAVGESSW RRALDAFEWL ARSSAPASRA VAVVLGVLGR
0201: ARQDSIAEEV FLRFAGEGAT VQVFNAMMGV YARSGRFDDA RQLLDTMHDR GIDPDLVSFN TLINARSKSG CLAAGVALDL LFEVRQSGLR PDVITYNTLI
0301: SACSQSSNLE DAVTVFEDMI ASECRPDLWT YNAMVSVHGR CGKAEEAERL FRELVEKGFM PDAITYNSLL YAFAKEGNVD KVEHTCEQLV KAGFKKNEIT
0401: YNTMIHMYGK MGRLDLAVGL YDEMRAMGCT PDAVTYTVMI DSLGKMNRIA EAGKVLEDMT DAGLKPTLIA FSALICAYAK GGRRADAENT FDCMIASGVK
0501: PDRLAYLVML DVFARSGDTE KMLCLYRKMM NDNYRPDDDM YQVLLVALAK EDKCEEIEEV IQDMELLCRM NLGIISTMLI KARCVSQGAK LLKKACLQGY
0601: KPDIKSLRSI MNAYVMTEKH EEGLSLLECI CEHVSFSQDL ISECSIMLLC RKQTSISAYE QYSQRLMLKY PGQNCNLYEY LITCLIEAEF FSEACQVFCD
0701: MQFIGIEASK SIYESIISTY CKLGFPETAH RLMDDALQSG IPLNILSCRV IIIEAYGKIK LWQQAEILVK GLRQASGIDR RIWNALIHAY AESGLYEKAR
0801: AVFDNMIKTG PLPTVDSVNG MMRALIVDGR LDELYVVVEE LQDMNFKISK STVLLLLDAF AKAGDVFEVM KIYNGMKAAG YLPNMHLYRS MISLLCHHNR
0901: FRDVELMIAE MEGAGFKPDL AILNALLNMY TAAGNFDRTT QVYRSILEAG LEPDEDTYNT LIVMYCRSFR PEEGFTLLNE MGKRGLTPKL QSYKSLLAAS
1001: AKAELREQAD QIFEEMRSKS YQLNRSIYHM MMKIYRNAGN HSKAENLLAV MKEDGIEPTI ATMHILMTSY GTAGQPREAE NVLNNLKSSS LEVSTLPYST
1101: VFDAYLKNGD YNHGTTKLLE MKRDGVEPDH QVWTCFIRAA SLCEQTADAI LLLKSLQDCG FDLPIRLLTE RTPSLLSEIA NYLEELEALE DSAALNFVNA
1201: VEDLLWAFEC RATASRIFQL AVERSIYRDN VFRYPWQSLY RKISFEVVVA QKDWGADFRK LSAGAALVGL TLWLDHMQDA SLQGSPESPK SVVLVTGEGE
1301: YNMVSLRKTI RAYLLEMGSP FLPCRARSGR FVVKDYSLKM WLKDSPFCMD LELKDAPAHP KLNSMKLIEG YFMRAGFVSA FKDIHERLGE VWPKKFSRLA
1401: LLSEECRDEV IKADIQGRKE KLERMKKKGI VTARKSKTRA RRGKFVRQQK
0001: MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Arabidopsis Description
EMB1270Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.