Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95788 | Canola | cytosol | 16.95 | 69.83 |
| VIT_16s0039g02570.t01 | Wine grape | plastid | 66.85 | 66.53 |
| KRH27784 | Soybean | plastid | 63.46 | 62.95 |
| Bra022281.1-P | Field mustard | cytosol | 55.32 | 62.2 |
| AT3G18110.1 | Thale cress | plastid | 59.93 | 61.39 |
| HORVU7Hr1G033940.1 | Barley | cytosol | 47.59 | 55.8 |
| GSMUA_Achr10P... | Banana | plastid | 50.31 | 53.77 |
| Os06t0199100-01 | Rice | cytosol | 46.58 | 53.55 |
| KXG19540 | Sorghum | plastid | 51.59 | 52.63 |
| TraesCS7D01G162800.1 | Wheat | plastid | 51.53 | 52.49 |
| TraesCS7B01G066600.1 | Wheat | plastid | 51.32 | 52.39 |
| TraesCS7A01G161500.1 | Wheat | plastid | 51.32 | 52.32 |
| Zm00001d045014_P003 | Maize | plastid | 50.98 | 51.86 |
| CDX95789 | Canola | cytosol | 21.63 | 42.59 |
| CDX92197 | Canola | cytosol | 3.12 | 30.07 |
| Solyc03g097000.2.1 | Tomato | plastid | 12.47 | 17.28 |
| Solyc07g005950.2.1 | Tomato | cytosol | 10.92 | 16.86 |
| PGSC0003DMT400001470 | Potato | nucleus | 1.69 | 14.2 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:K4BJA1 |
| PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF556 |
| InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | EnsemblPlantsGene:Solyc03g096830.2 | EnsemblPlants:Solyc03g096830.2.1 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0002767DF2 | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G18110) UniProtKB/Swiss-Prot;Acc:Q5G1S8]
Coordinates
chr3:-:59193589..59199556
Molecular Weight (calculated)
166579.0 Da
IEP (calculated)
6.609
GRAVY (calculated)
-0.251
Length
1475 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAASTALLSI APPQFSSTAK SKVTRKPPFC SCSLDSSNSA TTSSTVSEER DITPKKFTYT RASPSTRWPH LKFTETHQNS QPSPLSVAAP SVKDKEFDSG
0101: SDGNVGSYEG RRMEKNGEES LDPNGFQSND ETQEVLGRPS RTRAKKMTKL ALKRAKDWRQ RVQFLTDKIL GLKSEEFVAD VLDEKMVQMT PTDFCFVVKW
0201: VGQSSWQRAL EVYEWLNLRN WYSPNARMLA TILAVLGKAN QEALAVEIFM RAEQSIGNTV QVYNSMMGVY ARNGRFSQVQ QLLELMHERG LEPDLVSFNT
0301: LINARLKSGP MTPNLAIELL DEVRSSGIQP DIITYNTLIS ACSRESNVEE AVKVFNDMES HRCQPDLWTY NAMISVFGRC GMDGEAARLF NELEANGFYP
0401: DAVTYNSLLH AFARQGNIEK VKEICEEMVN MGFGKDEMTY NTIIDMYGKQ GRHDLALQVY NDMTSSGRSP DVITYTILID SLGKDNKMAE ASKVMSEMLN
0501: AGIKPTVRTY SALICGYAKV GKRVDAEDMF DCMVRSGIQP DHLAYTVMLD MNLRFGETKK AMMLYHDMVH NGFTPDLALY EFMLRSLGRA NEEENIQIVI
0601: KDLKELGNLG PQSISSLLIK GECYDFAAKM LRLVIEEGSE FNHDDLLSIL GSYSSSGKIS EAIKLLNFVK EHDSRSKKLI IDASIIINCK AQNLNAALDE
0701: YRETGDSYTF SISVFESLIK CCEEAELFAE ASQIFSDMRA KGVEPSQDIC GTIAVIYCKM GFPETAHYLI DQVEANGVLL GDISFHVSLI EAYGKLKVVE
0801: KAESVVATIE HRYGVVGRTA YNALIQAYAL SGFYEKARAV FNTMMRNGPS PTVDTINNLM QALIVDGRLN ELYVLIQELQ DMGFKISKSS ILLMLEAFAQ
0901: AGNIFEVRKI YHGMRAAGYL PTMHLYRVII GLLSRTKQVR DAEAMLSEME EAGFKPDLSI WNSMLKLYTR IEDFKKTVHI YQRIQEAGLK PDLDTYNTLI
1001: IMYCRDRRPH ESLLLVHEMK RLDLFPERDT YKSLIAAFCK ELMLEQAEEL FESLRSEGHN LDRSFYHLMM KMYRSSGNHS KAEKLIEKMK ESGIEPSDAT
1101: MHLLMTSYGT SGQPMEAEKV LNSLKSNGVN LSTLQYGSVI DAYLKSREYE TGLLKLREMI GDGLEPDHRI WTCFIRAASL CEYITEAKTL LNAVADAGFN
1201: LPIRFLTENS ESLVLDLDLY LEQIETAEDK AALNFVNALE DLLWAFELRA TASWVFQLAI KRRIYHNDIF RVADKDWGAD FRKLSAGAAL VGLTLWLDHM
1301: QDASLEGFPE SPKSVVLITG KSYYNRVSLN STVRAYVWEM GSPFLPCKTR TGILVAKAHS LRMWLKDSPF CLDLELKNRP SLPEMNSMQL IEGCFIRRGL
1401: VPAFKEINER LGPVNPRKFA RLALLSNEKR EKVIQADIEG RREKLAKLRS TAVTKRRNTK NFRMNKFVRV SGPAK
0101: SDGNVGSYEG RRMEKNGEES LDPNGFQSND ETQEVLGRPS RTRAKKMTKL ALKRAKDWRQ RVQFLTDKIL GLKSEEFVAD VLDEKMVQMT PTDFCFVVKW
0201: VGQSSWQRAL EVYEWLNLRN WYSPNARMLA TILAVLGKAN QEALAVEIFM RAEQSIGNTV QVYNSMMGVY ARNGRFSQVQ QLLELMHERG LEPDLVSFNT
0301: LINARLKSGP MTPNLAIELL DEVRSSGIQP DIITYNTLIS ACSRESNVEE AVKVFNDMES HRCQPDLWTY NAMISVFGRC GMDGEAARLF NELEANGFYP
0401: DAVTYNSLLH AFARQGNIEK VKEICEEMVN MGFGKDEMTY NTIIDMYGKQ GRHDLALQVY NDMTSSGRSP DVITYTILID SLGKDNKMAE ASKVMSEMLN
0501: AGIKPTVRTY SALICGYAKV GKRVDAEDMF DCMVRSGIQP DHLAYTVMLD MNLRFGETKK AMMLYHDMVH NGFTPDLALY EFMLRSLGRA NEEENIQIVI
0601: KDLKELGNLG PQSISSLLIK GECYDFAAKM LRLVIEEGSE FNHDDLLSIL GSYSSSGKIS EAIKLLNFVK EHDSRSKKLI IDASIIINCK AQNLNAALDE
0701: YRETGDSYTF SISVFESLIK CCEEAELFAE ASQIFSDMRA KGVEPSQDIC GTIAVIYCKM GFPETAHYLI DQVEANGVLL GDISFHVSLI EAYGKLKVVE
0801: KAESVVATIE HRYGVVGRTA YNALIQAYAL SGFYEKARAV FNTMMRNGPS PTVDTINNLM QALIVDGRLN ELYVLIQELQ DMGFKISKSS ILLMLEAFAQ
0901: AGNIFEVRKI YHGMRAAGYL PTMHLYRVII GLLSRTKQVR DAEAMLSEME EAGFKPDLSI WNSMLKLYTR IEDFKKTVHI YQRIQEAGLK PDLDTYNTLI
1001: IMYCRDRRPH ESLLLVHEMK RLDLFPERDT YKSLIAAFCK ELMLEQAEEL FESLRSEGHN LDRSFYHLMM KMYRSSGNHS KAEKLIEKMK ESGIEPSDAT
1101: MHLLMTSYGT SGQPMEAEKV LNSLKSNGVN LSTLQYGSVI DAYLKSREYE TGLLKLREMI GDGLEPDHRI WTCFIRAASL CEYITEAKTL LNAVADAGFN
1201: LPIRFLTENS ESLVLDLDLY LEQIETAEDK AALNFVNALE DLLWAFELRA TASWVFQLAI KRRIYHNDIF RVADKDWGAD FRKLSAGAAL VGLTLWLDHM
1301: QDASLEGFPE SPKSVVLITG KSYYNRVSLN STVRAYVWEM GSPFLPCKTR TGILVAKAHS LRMWLKDSPF CLDLELKNRP SLPEMNSMQL IEGCFIRRGL
1401: VPAFKEINER LGPVNPRKFA RLALLSNEKR EKVIQADIEG RREKLAKLRS TAVTKRRNTK NFRMNKFVRV SGPAK
0001: MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Arabidopsis Description
EMB1270Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.