Factsheet for Solyc07g005950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g081280.2.1
Solyc12g094520.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	Solyc08g081280.2.1	AT1G18040.1	20706207
AT4G30825.1	Solyc12g094520.1.1	AT1G20480.1	20706207
AT4G30825.1	Solyc08g081280.2.1	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029152	Potato	cytosol	91.73	93.49
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	58.95	62.56
GSMUA_Achr5P04630_001	Banana	cytosol	43.14	60.68
KRH63118	Soybean	plastid	51.94	58.08
CDX68697	Canola	cytosol	53.19	57.79
AT4G30825.1	Thale cress	cytosol, plastid	54.45	57.52
Bra011225.1-P	Field mustard	cytosol	52.67	57.22
CDY28218	Canola	cytosol	52.36	56.88
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	46.91	48.17
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	46.91	48.17
HORVU5Hr1G064130.1	Barley	plastid	46.91	48.12
TraesCS5D01G229900.1	Wheat	plastid	46.28	47.63
EES13584	Sorghum	mitochondrion	46.28	46.92
Zm00001d024409_P001	Maize	plastid	45.86	45.58
Os09t0423300-01	Rice	mitochondrion	45.86	45.53
Solyc03g097000.2.1	Tomato	plastid	17.28	15.49
Solyc03g096830.2.1	Tomato	plastid	16.86	10.92

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005675
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CB66	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR12683	PANTHER:PTHR12683:SF10	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc07g005950.2	EnsemblPlants:Solyc07g005950.2.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C1AF	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:786504..789904

Molecular Weight (calculated)

109742.0 Da

IEP (calculated)

6.841

GRAVY (calculated)

-0.324

Length

955 amino acids

Sequence
(BLAST)

001: MSFSNTSHYP LKDLKSFPLF LIFLPNLQDS SWESKKLNCT VKPLIFTDSK CCVPSFLGGG AFVVSPFCNL KHIRVSRLET EELETSELSI DNEGVDGFEG
101: ELGNESFVTE RPNLGRDSKK GKFNVWRRFR RVKKVPKDSN YRSSFRLKDR KYGTEENPRI VFDVNSDENV IDSQNGVDFH DENIGSDSSL DQCNAILKEL
201: ERGDDGKALS FFRWMRKNGK LKQNVTAYNL ILRVLGRRGD WDGAEGMIKE MSMESGCKLT YQVFNTLIYA CHKKGLVELG AKWFHMMLEN GVQPNIATFG
301: LLMALYQKGW HVEEAEFAFS MMRNLKIMCQ SAYSSMLTIY TRMRLYDKAE EIIGFLRKDE VILNLENWLV LLNAYCQQGK LLEAEQVLAS MNQAGFSPNI
401: VAYNTLITGY GKISNMRDAQ RLFGDIKRVG MEPDETTYRS MIEGWGRADN YEEANRYYAE LKRLGHKPNS SNLYTMLNLQ VKHGDEEDVV RTIEEMMHTG
501: GEKSTILGIL LQAYEKLELI HEVPSILRGS LYDHVLRNQI SCSSLVMVYV KNSMIDDALK VLQEKQWKDA LFEDNLYHLL ICSCKDFGHP ENAVKVFTCM
601: PKSDKPNLHI ICTMIDIYST NNDFAEAEKL YLMLKNSDVK LDTITFSVVV RMYMKSGALE EACSVLDDMD RQKNIVPDTY LLRDMFRIYQ RCDKKDKLAD
701: LYYKLVKRGV IWDQEMYSCV INCCARALPV DELSRLFDEM LKRGFLPNTV TFNVMLDVYG KSRLFKRARE VFSMAKKCGL ADVISYNTLI AAYGRSKDFK
801: NMSSTVKKMH FNGFSVSLEA YNCMLDAYGK EGQMEKFRNV LERLKESGHS SDHYTYNIMI NIYGELGWIE EVSEVLAELK ESGSIGPDLC SYNTLIKAYG
901: IAGMVERAVD LVKEMRENGI EPDRITYTNL INALRKNDKF LEAVKWSLWM KQIGL

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.