Factsheet for Zm00001d024409_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
golgi 4
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010476_P001
Zm00001d027519_P001
Zm00001d038109_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	Zm00001d010476_P001	AT1G18040.1	20706207
AT4G30825.1	Zm00001d038109_P002	AT1G18040.1	20706207
AT4G30825.1	Zm00001d027519_P001	AT1G20480.1	20706207
AT4G30825.1	Zm00001d010476_P001	AT1G73690.1	20706207
AT4G30825.1	Zm00001d038109_P002	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13584	Sorghum	mitochondrion	87.51	89.28
TraesCS5D01G229900.1	Wheat	plastid	69.93	72.41
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	70.03	72.37
HORVU5Hr1G064130.1	Barley	plastid	69.3	71.54
Os09t0423300-01	Rice	mitochondrion	71.28	71.21
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	68.26	70.54
GSMUA_Achr5P04630_001	Banana	cytosol	43.7	61.86
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	46.51	49.67
KRH63118	Soybean	plastid	43.91	49.41
CDX68697	Canola	cytosol	44.12	48.24
CDY28218	Canola	cytosol	43.7	47.78
Bra011225.1-P	Field mustard	cytosol	43.39	47.44
PGSC0003DMT400029152	Potato	cytosol	45.68	46.85
AT4G30825.1	Thale cress	cytosol, plastid	43.39	46.13
Solyc07g005950.2.1	Tomato	cytosol	45.58	45.86
Zm00001d045550_P002	Maize	plastid	16.86	15.5
Zm00001d045014_P003	Maize	plastid	18.83	12.48

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6IZ35	ProteinID:AQK41132.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR12683	PANTHER:PTHR12683:SF10	InterPro:Pentatricopeptide_repeat	SignalP:SignalP-noTM
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000843E8EF	EnsemblPlantsGene:Zm00001d024409	EnsemblPlants:Zm00001d024409_P001	EnsemblPlants:Zm00001d024409_T001

Description

Pentatricopeptide repeat-containing protein chloroplastic

Coordinates

chr10:+:69419168..69422702

Molecular Weight (calculated)

108255.0 Da

IEP (calculated)

8.646

GRAVY (calculated)

-0.157

Length

961 amino acids

Sequence
(BLAST)

001: MKGRRQSVVR RMYKALLFLV ADLVLESAAG PPELRRRNLA SNPVHVGLDL VGFSSWMLPV GDHWCAGSAA VTSHGVGYVG AGRKNCHRAC LKNGVVCSFD
101: DSGVRVSMLC SSLPSEDVSF SSKMSLVNST GFAQKKKGSK VWRRSQGGKK LVRHRAPKHG LGKDRHGHRS SVKDDDTDAV LSGISKESSI EECNSALIRL
201: EKLSDEKALK FFEWMKVSGK LKGNTHAYHL ALKAIAWKED WKMAELLLHE MVADSDCALD ARAFNGLIYV CAKRRLDAWA TKWFHMMLER EVQPNLSTVG
301: MLMGLYQKTG KLSEAEFTFE KMRNCNIKCV NAYSAMITLY TRLGLFAKSE DTINLMNNDG LVPNMENWLV RLNVYCQQGK MEEAELVLQS IVDEGFTLNV
401: IAYNTLITGY GKSSDMQKAN KVFDSFGSAG LAPDETTYRS MVEGFGRANI YEETILYYRK LKGAGFRPNA SNFYTMINLL ARHDDNETAA EILQDMRAAG
501: CQCSSIVTFL VRAYGAVGRM HKVLPILQSC FDKILLDATS CSILVTSLVQ NSLLEEALYI LREKKWKDSA FEDNLYHILI CSCKEGGNYN DAVRIYNQMP
601: KSETHPNPRI SCTMIDVFST MERFADAETI LLELKASASV LDMIAYSVIV RMYIKARRLK DACSVLAEME KQKEIIPDKY LFLDMLRTYQ KCGLLEKLAD
701: TYYWIRKSQV KCDEAMYNCI INCCGRAIPV DELSRIFDEM LQQGHLANTV TFNVLLDIYG KAGLFNRAEK VFIMARKQGL ADIISYNTII AAYAKGGNFL
801: SMNYFVQMMQ DAGFPVSLEA YNCMLDAYGK AGRLEEFASV LQKMKRAKCK FDHYTYNIMI NIYGRRGWIQ DVSNVLAELK DRGVEPDLYS YNTLIKAYGI
901: ARMPEDAVKL MQEMRVKGIS PDRVTYANLI AALQRNENFL EAVKWSLWMK QTGVAGCGAR T

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.