Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G062980.2 | |
| HORVU4Hr1G081940.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30825.1 | HORVU1Hr1G062980.2 | AT1G18040.1 | 20706207 |
| AT4G30825.1 | HORVU4Hr1G081940.3 | AT1G20480.1 | 20706207 |
| AT4G30825.1 | HORVU1Hr1G062980.2 | AT1G73690.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G229900.1 | Wheat | plastid | 93.45 | 93.75 |
| TraesCS5B01G220900.1 | Wheat | mitochondrion, plastid | 93.13 | 93.23 |
| TraesCS5A01G222100.1 | Wheat | mitochondrion, plastid | 92.37 | 92.47 |
| Os09t0423300-01 | Rice | mitochondrion | 76.58 | 74.12 |
| EES13584 | Sorghum | mitochondrion | 71.43 | 70.59 |
| Zm00001d024409_P001 | Maize | plastid | 71.54 | 69.3 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 46.83 | 64.21 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 49.52 | 51.22 |
| KRH63118 | Soybean | plastid | 46.83 | 51.05 |
| CDX68697 | Canola | cytosol | 46.51 | 49.26 |
| CDY28218 | Canola | cytosol | 45.65 | 48.35 |
| Bra011225.1-P | Field mustard | cytosol | 45.33 | 48.01 |
| PGSC0003DMT400029152 | Potato | cytosol | 48.12 | 47.81 |
| AT4G30825.1 | Thale cress | cytosol, plastid | 46.19 | 47.57 |
| Solyc07g005950.2.1 | Tomato | cytosol | 48.12 | 46.91 |
| HORVU0Hr1G005920.1 | Barley | peroxisome | 17.51 | 16.87 |
| HORVU7Hr1G033940.1 | Barley | cytosol | 18.15 | 13.43 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G064130.1 | EnsemblPlantsGene:HORVU5Hr1G064130 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:PPR_long | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR12683 |
| PANTHER:PTHR12683:SF10 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF17177 | PFscan:PS51375 | SEG:seg |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | UniParc:UPI00029543AA | UniProt:M0WF87 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr5H:-:495461576..495464892
Molecular Weight (calculated)
104232.0 Da
IEP (calculated)
8.288
GRAVY (calculated)
-0.219
Length
931 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDLVGFSS RVLPTSAGYA ADRRHARGGA AASHGFFAWR SHPRTTLKDS VVCSTEDGGG GGAESTLCVS GPSENASRAT GGVAADLGRG IADGITASQT
101: SSMGRKKGGR LWRRPSGGDK PARAPRRAPV REDPQVRRVL VNNPDVNAIL SGVSRDSSIA ECNSVLIRLE KHSDVKALDF FVWMKANGKL ERNADAYRLA
201: LQAIAWKEDW RRAELLLHEM VAVSGCRLDA GAFNGLIYVC AKRRLADWGT KWFHMMLERK VQPNVSTVGM LMGLYQKTGN LKEAEFAFVK TRECNVKCVN
301: AYSAMITLYT RSRLFDKSEE VITLMKHDGV VPNMENWLVQ LNAYSQQGKM EEAELVLQSM EDGGVSPNVV AYNTVITGYG KVSDMQKAKE VFDRLGSSGL
401: APDETTYRSM IEGFGRADKH KEAISYYKKL KSSGFQPNAS NFYTMINLIA RHDDSESAAE ILRDMRAAGC QCSSIVTILV RAYRTVGRMH KVLPILQSCF
501: YKKVLYDATS CSILVTTLVQ NSLLEEALCV LREKKWQDSD FEDNLYHILI CSCKETGSYE DAVRIYNQMP ESQTHPNLRI CCTMIDVFSA MERFTHAETL
601: YLELKVSACV LDMIAYSVIV RMYNKAGRPE DACSVLEDME KQKEIVPDKY LFLDMLRTYQ KCGMLEKLTD TYYRILKSEV EWDEAMYNCI INCCGPAIPV
701: DELSRIFDEM IQLGHLASTV TLNVLLDIYG KAGLFNRAEK VFSMARKQGL ADTISYNTII AAYAQSGNFR SMNYFVQKMQ DAGFPVSLEA YNCMLNAYGK
801: SGQLEKFSAV LQKMRRARCD FDHYTYNIMM NIYGRKGWIE GVAYVLSELK SRGVEPDLYS YNTLIKAYGI AGMPEDAVKL MQEMRIKGIN ADRVTYTNLI
901: AALQRNENFL EAVKWSLWMK QTGVVGVGAR P
101: SSMGRKKGGR LWRRPSGGDK PARAPRRAPV REDPQVRRVL VNNPDVNAIL SGVSRDSSIA ECNSVLIRLE KHSDVKALDF FVWMKANGKL ERNADAYRLA
201: LQAIAWKEDW RRAELLLHEM VAVSGCRLDA GAFNGLIYVC AKRRLADWGT KWFHMMLERK VQPNVSTVGM LMGLYQKTGN LKEAEFAFVK TRECNVKCVN
301: AYSAMITLYT RSRLFDKSEE VITLMKHDGV VPNMENWLVQ LNAYSQQGKM EEAELVLQSM EDGGVSPNVV AYNTVITGYG KVSDMQKAKE VFDRLGSSGL
401: APDETTYRSM IEGFGRADKH KEAISYYKKL KSSGFQPNAS NFYTMINLIA RHDDSESAAE ILRDMRAAGC QCSSIVTILV RAYRTVGRMH KVLPILQSCF
501: YKKVLYDATS CSILVTTLVQ NSLLEEALCV LREKKWQDSD FEDNLYHILI CSCKETGSYE DAVRIYNQMP ESQTHPNLRI CCTMIDVFSA MERFTHAETL
601: YLELKVSACV LDMIAYSVIV RMYNKAGRPE DACSVLEDME KQKEIVPDKY LFLDMLRTYQ KCGMLEKLTD TYYRILKSEV EWDEAMYNCI INCCGPAIPV
701: DELSRIFDEM IQLGHLASTV TLNVLLDIYG KAGLFNRAEK VFSMARKQGL ADTISYNTII AAYAQSGNFR SMNYFVQKMQ DAGFPVSLEA YNCMLNAYGK
801: SGQLEKFSAV LQKMRRARCD FDHYTYNIMM NIYGRKGWIE GVAYVLSELK SRGVEPDLYS YNTLIKAYGI AGMPEDAVKL MQEMRIKGIN ADRVTYTNLI
901: AALQRNENFL EAVKWSLWMK QTGVVGVGAR P
001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.