Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400032131 | |
| PGSC0003DMT400075394 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30825.1 | PGSC0003DMT400032131 | AT1G18040.1 | 20706207 |
| AT4G30825.1 | PGSC0003DMT400075394 | AT1G20480.1 | 20706207 |
| AT4G30825.1 | PGSC0003DMT400032131 | AT1G73690.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g005950.2.1 | Tomato | cytosol | 93.49 | 91.73 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 60.09 | 62.56 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 44.5 | 61.41 |
| KRH63118 | Soybean | plastid | 53.15 | 58.31 |
| AT4G30825.1 | Thale cress | cytosol, plastid | 55.6 | 57.63 |
| CDX68697 | Canola | cytosol | 53.9 | 57.45 |
| Bra011225.1-P | Field mustard | cytosol | 53.68 | 57.22 |
| CDY28218 | Canola | cytosol | 53.15 | 56.66 |
| HORVU5Hr1G064130.1 | Barley | plastid | 47.81 | 48.12 |
| TraesCS5A01G222100.1 | Wheat | mitochondrion, plastid | 47.71 | 48.06 |
| TraesCS5B01G220900.1 | Wheat | mitochondrion, plastid | 47.6 | 47.96 |
| TraesCS5D01G229900.1 | Wheat | plastid | 47.07 | 47.52 |
| EES13584 | Sorghum | mitochondrion | 47.17 | 46.92 |
| Zm00001d024409_P001 | Maize | plastid | 46.85 | 45.68 |
| Os09t0423300-01 | Rice | mitochondrion | 46.42 | 45.22 |
| PGSC0003DMT400008145 | Potato | plastid | 18.57 | 16.34 |
| PGSC0003DMT400001470 | Potato | nucleus | 2.77 | 14.77 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102600654 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M1ASA8 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 |
| EnsemblPlantsGene:PGSC0003DMG400011207 | PGSC:PGSC0003DMG400011207 | EnsemblPlants:PGSC0003DMT400029152 | PFscan:PS51375 | PANTHER:PTHR12683 | PANTHER:PTHR12683:SF10 |
| InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002951DEE | RefSeq:XP_006343601.1 |
| RefSeq:XP_006343602.1 | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011207]
Coordinates
chr7:-:1268826..1273619
Molecular Weight (calculated)
107238.0 Da
IEP (calculated)
7.264
GRAVY (calculated)
-0.305
Length
937 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLKLPLYV DSSWESKKLN CTVKALNFTD SKCWVPSFLG GGAFVVSPFC NLKHIRVSRL ETEELETSEL SLDNEGVDGF EGELGNDSFV TERPNLGRDS
101: QKGKFNVWKR FRRVKKVPRD SNHRSSFRLK DRKNGMEENP MIAFDVNSDE SVIDSQNGVD FPDENIGSDS SLDQCNAILK ELERGNDGKA LSFFRWMRKN
201: GKLKQNVTAY NLILRVLGRR GDWDGAEGMI KEMSMESGCK LTYQVFNTLI YACHKKGLVE LGAKWFHMML ENGVQPNIAT FGMLMALYQK GWHVEEAEFA
301: FSMMRNLKIM CQSAYSSMLT IYTRMRLYDK AEEIIGFLRK DEVILNLENW LVLLNAYCQQ GKLLEAEQVL ASMNEAGFSP NIVAYNTLIT GYGKISNMLD
401: AQRLFGDLKR VGVDPDETTY RSMIEGWGRT DNYEEANRYY VELKRLGHKP NSSNLYTMLN LQVKHGDEVD VVRTIEEMMH TGGEKSTILG ILLQAYEKLE
501: LIREVPSILG GSLYDHVLRN QIACSSLVMA YVKNSMIDDA LKVLREKQWK DALFEDNLYH LLICSCKDFG HPENAVKVFT CMPKSDKPNL HIICTMIDIY
601: STNNNFAEAE KLYLMLKNSN VKLDTITFSV VVRMYMKSGA LEEACSVLDD MDKQKNIVPD TYLLRDMLRI YQRCDKKDKL ADLYYKLVKR GVIWDQEMYS
701: CVINCCARAL PVDELSRLFD EMLKRGFLPN TVTFNVMLDV YGKSRLFKRA REVFSMAKKC GLADVISYNT LIAAYGRSKD FKNMSSTVKK MHFNGFSVSL
801: EAYNCMLDAY GKEGQMEKFR NVLERLKESG HSSDHYTYNI MINIYGELGW IEEVSNVLAE LKESGSIGPD LCSYNTLIKA YGIAGMVERA VDLVKEMRKN
901: GIEPDRITYT NLINALRKND KFLEAVKWSL WMKQIGL
101: QKGKFNVWKR FRRVKKVPRD SNHRSSFRLK DRKNGMEENP MIAFDVNSDE SVIDSQNGVD FPDENIGSDS SLDQCNAILK ELERGNDGKA LSFFRWMRKN
201: GKLKQNVTAY NLILRVLGRR GDWDGAEGMI KEMSMESGCK LTYQVFNTLI YACHKKGLVE LGAKWFHMML ENGVQPNIAT FGMLMALYQK GWHVEEAEFA
301: FSMMRNLKIM CQSAYSSMLT IYTRMRLYDK AEEIIGFLRK DEVILNLENW LVLLNAYCQQ GKLLEAEQVL ASMNEAGFSP NIVAYNTLIT GYGKISNMLD
401: AQRLFGDLKR VGVDPDETTY RSMIEGWGRT DNYEEANRYY VELKRLGHKP NSSNLYTMLN LQVKHGDEVD VVRTIEEMMH TGGEKSTILG ILLQAYEKLE
501: LIREVPSILG GSLYDHVLRN QIACSSLVMA YVKNSMIDDA LKVLREKQWK DALFEDNLYH LLICSCKDFG HPENAVKVFT CMPKSDKPNL HIICTMIDIY
601: STNNNFAEAE KLYLMLKNSN VKLDTITFSV VVRMYMKSGA LEEACSVLDD MDKQKNIVPD TYLLRDMLRI YQRCDKKDKL ADLYYKLVKR GVIWDQEMYS
701: CVINCCARAL PVDELSRLFD EMLKRGFLPN TVTFNVMLDV YGKSRLFKRA REVFSMAKKC GLADVISYNT LIAAYGRSKD FKNMSSTVKK MHFNGFSVSL
801: EAYNCMLDAY GKEGQMEKFR NVLERLKESG HSSDHYTYNI MINIYGELGW IEEVSNVLAE LKESGSIGPD LCSYNTLIKA YGIAGMVERA VDLVKEMRKN
901: GIEPDRITYT NLINALRKND KFLEAVKWSL WMKQIGL
001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.