Factsheet for PGSC0003DMT400075394

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 3
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094520.1.1	Tomato	plastid	97.46	97.46
VIT_18s0001g00290.t01	Wine grape	peroxisome	76.77	77.05
AT1G20510.1	Thale cress	plastid	75.14	75.82
CDY33631	Canola	plastid	74.05	73.78
KRH17509	Soybean	peroxisome, plastid	73.14	73.41
CDX96633	Canola	plastid	73.5	73.24
Bra016463.1-P	Field mustard	plastid	73.32	73.06
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	70.6	70.86
GSMUA_Achr8P13230_001	Banana	peroxisome	62.61	68.59
HORVU4Hr1G081940.3	Barley	peroxisome	64.61	64.73
TraesCS5A01G498800.1	Wheat	peroxisome	64.61	64.49
EER95569	Sorghum	peroxisome	64.61	64.38
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	64.43	64.31
TraesCS4D01G323500.1	Wheat	plastid	64.07	64.07
Zm00001d027519_P001	Maize	plasma membrane	63.88	63.88
Os03t0132000-01	Rice	plasma membrane	63.88	63.77
AT1G20500.1	Thale cress	plastid	62.98	63.09
CDY31883	Canola	plastid	60.8	61.69
Bra012232.1-P	Field mustard	peroxisome, plastid	61.34	61.57
CDY01370	Canola	peroxisome, plastid	61.34	61.45
CDY29527	Canola	peroxisome	58.98	61.32
Bra012233.1-P	Field mustard	plastid	60.25	61.25
CDY01369	Canola	plastid	60.25	61.14
CDY31472	Canola	peroxisome	56.99	61.09
CDX96637	Canola	plastid	60.98	60.76
CDY33628	Canola	plastid	60.62	60.51
Bra025822.1-P	Field mustard	peroxisome	59.53	60.41
Bra016464.1-P	Field mustard	plastid	61.34	60.25
AT1G20480.1	Thale cress	peroxisome	61.71	60.18
CDX96636	Canola	golgi, vacuole	41.56	59.79
Bra016465.1-P	Field mustard	plastid	53.18	59.67
CDX96638	Canola	peroxisome	56.81	59.39
Bra016466.1-P	Field mustard	peroxisome	58.98	59.31
AT5G38120.1	Thale cress	plastid	59.17	59.27
CDY33627	Canola	peroxisome	56.99	56.37
CDY31474	Canola	peroxisome	58.8	55.86
AT1G20490.2	Thale cress	peroxisome	44.28	54.59
CDY33629	Canola	golgi, vacuole	39.93	52.01
PGSC0003DMT400039281	Potato	peroxisome	45.19	45.11
PGSC0003DMT400024014	Potato	peroxisome	43.19	41.46
PGSC0003DMT400020978	Potato	peroxisome	40.47	41.22
PGSC0003DMT400037485	Potato	peroxisome	39.38	39.6
PGSC0003DMT400074444	Potato	peroxisome	39.02	39.59
PGSC0003DMT400036886	Potato	peroxisome	38.48	38.9
PGSC0003DMT400051216	Potato	peroxisome	38.11	36.78
PGSC0003DMT400008182	Potato	peroxisome	37.21	36.03

Protein Annotations

EntrezGene:102581161	MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009695	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	UniProt:M1CV33
PFAM:PF00501	PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG400029322	PGSC:PGSC0003DMG400029322	EnsemblPlants:PGSC0003DMT400075394	ScanProsite:PS00455
PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI000296D396	RefSeq:XP_006342547.1
SEG:seg	:	:	:	:	:

Description

AMP dependent CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400029322]

Coordinates

chr12:-:57354831..57359405

Molecular Weight (calculated)

59674.4 Da

IEP (calculated)

9.326

GRAVY (calculated)

0.052

Length

551 amino acids

Sequence
(BLAST)

001: MAQYNNNPTV DPNSGYSPAN STFYSKRKPI PFPANESLDV TTFISSRAHS GKIAFIDATT GRKLTFSDVW NAVESLATSL SVDMSIRKGD VVLLLSPNSI
101: FFPIICLAVM SLGAIITTTN PLNTNNEIAK QIKDSNPVLA FTIPQLLPKL TGSNLPVILI DGVNDSNSNL KIVGDLQKMI QRKPSESRLK ERVTQNDVAT
201: LLYSSGTTGA SKGVISSHKN LIAMVQTIVG RFNLDEGVRT FICTVPMFHI YGLAAFAAGL LASGSTVVVL SKFEMDEMLS SIHKYKATSL PLVPPILVAL
301: VNNADLIKKK YDLSSLVSVL SGGAPLSKEV IEGFVEKYPS VRILQGYGLT ESTGIGASTD SLEESRRYGT AGMLSPSMEG KIVDPESGKA LPVNKTGELW
401: LRGPTIMKGY FSNEEATAST LDSDGWLRTG DLCYIDEDGF IFVVDRLKEL IKYKGYQVPP AELEALLLTH PEISDAAVIP FPDKMVGQFP MAYVVRKTGS
501: TISASAVMDF IAKQVAPYKR IRRVAFVASI PKNPSGKILR KDLIKLATSK L

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.