Factsheet for Bra016464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96636	Canola	golgi, vacuole	64.35	94.26
Bra016465.1-P	Field mustard	plastid	67.2	76.78
Bra012233.1-P	Field mustard	plastid	71.84	74.35
Bra012232.1-P	Field mustard	peroxisome, plastid	72.19	73.77
Bra016463.1-P	Field mustard	plastid	64.71	65.64
VIT_18s0001g00290.t01	Wine grape	peroxisome	62.75	64.12
KRH17509	Soybean	peroxisome, plastid	60.96	62.3
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	60.43	61.75
Solyc12g094520.1.1	Tomato	plastid	60.61	61.71
PGSC0003DMT400075394	Potato	peroxisome, plastid	60.25	61.34
GSMUA_Achr8P13230_001	Banana	peroxisome	54.37	60.64
Bra025822.1-P	Field mustard	peroxisome	56.15	58.01
Bra016466.1-P	Field mustard	peroxisome	56.51	57.85
Zm00001d027519_P001	Maize	plasma membrane	56.33	57.35
HORVU4Hr1G081940.3	Barley	peroxisome	55.79	56.91
TraesCS4D01G323500.1	Wheat	plastid	55.79	56.81
EER95569	Sorghum	peroxisome	55.97	56.78
TraesCS5A01G498800.1	Wheat	peroxisome	55.79	56.7
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	55.62	56.52
Os03t0132000-01	Rice	plasma membrane	54.72	55.62
Bra029229.1-P	Field mustard	peroxisome	43.14	43.29
Bra029561.1-P	Field mustard	peroxisome	39.75	41.14
Bra013369.1-P	Field mustard	peroxisome, plastid	38.68	37.87
Bra030429.1-P	Field mustard	peroxisome	34.76	35.33
Bra029560.1-P	Field mustard	peroxisome	33.51	35.21
Bra031263.1-P	Field mustard	peroxisome	34.05	34.54
Bra031266.1-P	Field mustard	peroxisome	33.69	34.24
Bra004109.1-P	Field mustard	peroxisome	33.69	33.99
Bra001820.1-P	Field mustard	peroxisome	34.58	33.16
Bra001819.1-P	Field mustard	peroxisome	33.87	33.1
Bra031265.1-P	Field mustard	peroxisome	32.44	32.56
Bra036646.1-P	Field mustard	peroxisome	32.44	12.31

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
EnsemblPlantsGene:Bra016464	EnsemblPlants:Bra016464.1	EnsemblPlants:Bra016464.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M4DIY7	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0002546B66	SEG:seg	:	:	:	:

Description

AT5G38120 (E=5e-229) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein

Coordinates

chrA08:+:18600339..18602334

Molecular Weight (calculated)

60815.4 Da

IEP (calculated)

8.819

GRAVY (calculated)

-0.030

Length

561 amino acids

Sequence
(BLAST)

001: MAVCKRSSSS SSLSPIHPRN GFCNANSTFY SKRNPLPLPA NSSLDVTTFI SSQAHHGTTA FIDAATGHRI SFSDLWRSVD NVADCLHRDM GIRRGDVVLI
101: LSPNSISIPL VCLSVMSLGA VVTTANPLNT ASEISRQVAD CNPKLAFATP DQAPKLAASG AISVVLTEED EERVGSTLGV RVVGSLSEMM KKKPSERRVR
201: NRVNRDETAM LLYSSGTTGR SKGVIISHGN LIAHVARYIA EPLEPNQTFL CTVPLFHTFG LLNYALATVA LGSTVVILRK FDLHGMMAAV EKYRATTLVL
301: VPPILVAMIN GSDLIKARYD LTSLKTVRSG GAPLSKEVTE SFLEKYPTVD IFQGYALTES NSSGASTDSV EESKRHGAVG LLSSGVEARV VDPDTGRIMG
401: VNQTGELWLK GPAITKGYYR NEEATKETIN SEGWLKTGDL CCIDDDGFVF ILDRLKELIK YKAYQVPPAE LEGLLLTHPE IVDAAVIPFP DREVGQLPMA
501: YIVRKTGSLL SEKSLMEFVA KQVAPYKRVR KVAFVSSIPK NPSGKILRKD LIKLATSNST V

Best Arabidopsis Sequence Match ( AT5G38120.1 )
(BLAST)

001: MANSQRSSSL IDPRNGFCTS NSTFYSKRKP LALPSKESLD ITTFISSQTY RGKTAFIDAA TDHRISFSDL WMAVDRVADC LLHDVGIRRG DVVLVLSPNT
101: ISIPIVCLSV MSLGAVLTTA NPLNTASEIL RQIADSNPKL AFTTPELAPK IASSGISIVL ERVEDTLRVP RGLKVVGNLT EMMKKEPSGQ AVRNQVHKDD
201: TAMLLYSSGT TGRSKGVNSS HGNLIAHVAR YIAEPFEQPQ QTFICTVPLF HTFGLLNFVL ATLALGTTVV ILPRFDLGEM MAAVEKYRAT TLILVPPVLV
301: TMINKADQIM KKYDVSFLRT VRCGGAPLSK EVTQGFMKKY PTVDVYQGYA LTESNGAGAS IESVEESRRY GAVGLLSCGV EARIVDPNTG QVMGLNQTGE
401: LWLKGPSIAK GYFRNEEEII TSEGWLKTGD LCYIDNDGFL FIVDRLKELI KYKGYQVPPA ELEALLLNHP DILDAAVIPF PDKEAGQFPM AYVARKPESN
501: LCEKKVIDFI SKQVAPYKKI RKVAFIDSIP KTPSGKTLRK DLIKFAISKI

Arabidopsis Description

4CLL84-coumarate--CoA ligase-like 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84P26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.