Factsheet for Bra036646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011566.1-P	endoplasmic reticulum
Bra017147.1-P	endoplasmic reticulum
Bra017681.1-P	endoplasmic reticulum
Bra032631.1-P
Bra033272.1-P
Bra034658.1-P	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	Bra032631.1-P	AT1G01280.1	23632852
AT1G62940.1	Bra033272.1-P	AT1G01280.1	23632852
AT1G62940.1	Bra017147.1-P	AT1G02050.1	23632852
AT1G62940.1	Bra017147.1-P	AT1G02050.1	23632852
AT1G62940.1	Bra011566.1-P	AT4G34850.1	23632852
AT1G62940.1	Bra017681.1-P	AT4G34850.1	23632852
AT1G62940.1	Bra034658.1-P	AT4G34850.1	23632852
AT1G62940.1	Bra011566.1-P	AT4G34850.1	23632852
AT1G62940.1	Bra017681.1-P	AT4G34850.1	23632852
AT1G62940.1	Bra034658.1-P	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39816	Canola	peroxisome	36.44	99.81
AT1G62940.1	Thale cress	peroxisome	34.42	93.91
CDY03253	Canola	peroxisome	93.24	89.37
VIT_01s0010g03720.t01	Wine grape	peroxisome	27.32	72.79
KRH46374	Soybean	peroxisome	26.44	70.71
Solyc02g088710.2.1	Tomato	peroxisome	26.23	70.16
GSMUA_Achr6P36020_001	Banana	peroxisome	23.33	69.7
KRG98485	Soybean	peroxisome	26.03	69.62
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	20.76	68.07
Os04t0310800-01	Rice	peroxisome	23.46	62.52
TraesCS2A01G272900.1	Wheat	plastid	25.42	60.65
TraesCS2B01G291100.1	Wheat	plastid	25.36	60.58
EER99996	Sorghum	plastid	24.75	60.5
TraesCS2D01G272200.1	Wheat	plastid	25.29	60.42
Zm00001d003702_P001	Maize	plastid	24.41	59.18
Zm00001d039274_P003	Maize	peroxisome	28.19	41.37
KXG26308	Sorghum	peroxisome	14.47	39.27
Bra030429.1-P	Field mustard	peroxisome	14.13	37.86
Bra031266.1-P	Field mustard	peroxisome	14.0	37.5
Bra025822.1-P	Field mustard	peroxisome	13.59	37.02
Bra016466.1-P	Field mustard	peroxisome	13.59	36.68
Bra029561.1-P	Field mustard	peroxisome	13.18	35.98
Bra031263.1-P	Field mustard	peroxisome	13.39	35.8
Bra004109.1-P	Field mustard	peroxisome	13.46	35.79
Bra029229.1-P	Field mustard	peroxisome	13.25	35.06
Bra016463.1-P	Field mustard	plastid	13.05	34.9
Bra001819.1-P	Field mustard	peroxisome	13.39	34.49
Bra031265.1-P	Field mustard	peroxisome	12.91	34.17
Bra012233.1-P	Field mustard	plastid	12.37	33.76
Bra001820.1-P	Field mustard	peroxisome	13.05	32.99
Bra012232.1-P	Field mustard	peroxisome, plastid	12.24	32.97
Bra013369.1-P	Field mustard	peroxisome, plastid	12.71	32.81
Bra016464.1-P	Field mustard	plastid	12.31	32.44
Bra016465.1-P	Field mustard	plastid	10.68	32.18
Bra029560.1-P	Field mustard	peroxisome	10.82	29.96

Protein Annotations

Gene3D:1.20.5.340	MapMan:20.2.2.2.4	MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C
InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra036646	EnsemblPlants:Bra036646.1	EnsemblPlants:Bra036646.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M4F6D6
PFAM:PF00501	PFAM:PF13193	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0002541A07	SEG:seg	:	:	:	:

Description

AT1G62940 (E=1e-268) ACOS5 | ACOS5 (ACYL-COA SYNTHETASE 5); 4-coumarate-CoA ligase/ long-chain-fatty-acid-CoA ligase/ medium-chain-fatty-acid-CoA ligase

Coordinates

chrA09:+:5894024..5901292

Molecular Weight (calculated)

162154.0 Da

IEP (calculated)

4.373

GRAVY (calculated)

-0.420

Length

1479 amino acids

Sequence
(BLAST)

0001: MTLTRYQIRN EYGLADKELY SDKEDAEVLL EGSSMAGLVG LLRQLGDLAE FAGEVFHNLH EELMTTSARG QGLAIRLQQL EAQVPNSVEI PILSQTDHST
0101: FFYDPGKFDV DGSGSCLKRY SDPSLLKKLT ASQLSKDERP IKPKKKASHI SNGERTLGDS QTSHAKLNQL FLMDHAEDPE ITVKLKRRHL NGPPPINSSS
0201: GTGYMEKFLK NSLPYCERVH ETLDQSSSAM ETDEVSTCNV RVDLSTTPSL VYPSNGETRK EREMEAIADD EREGGEAMVC VEKRSSSVNN DTDAPLASTE
0301: TAADKADVTQ TGVLASNVLH HSTEEGTSEG GTKDVQTNDV EDDHSQHVFS VETGSEMSLT GLVEDQFSSL TNQGTEKESD DCLLFENQHI STSDNFEDLS
0401: VDADAVHDSA VPKKEDETSS QDGYSVNTEH AGHISTFNIS SEVRDLILDT TPRDLHTGNI TPSASSWQED ALANSDLAEI SSDSGQEDPQ SMSIIADGRS
0501: ELEVQILDTQ SDGTVFAGDN QAMLNDEVSE TVPEEDLETI SDPHECLPGT QECFSPEYYI QTHSQGGQES QSETDSENTT AEAAAEFLPP QDVPLGVQCS
0601: TSEETLTCNE NEAEVEALNA PHQGDITSLN GNIPESVLSM GPTDQENCLD VPMAPFSTSL HVTPLEDLEI TPPLPPLPPT QWWMGKLVES VKTTETQFSP
0701: VPYNGNNSFY IHRDEKIHNG VVQATEAQDL SEASVTASEN QLRNEPSKAT EEEQSPSESV AWESLLTPEA TPEPESTEGL EALEWFSQNL KAHTNTNLTK
0801: LEEEPQLDHP LESPGETEGD NISYEYNEKV EKLPRDKESL VLGIDRSMLR KVSERNRTQL GAREDENDSL LEIIRSKSFN LRPADASVRH NFQVAAPITN
0901: LKVAAILEKA NSLRHAMAGS DDDHDSDSWK LKSNSTHLKM EAQKQDNEHI FRSLYPSVPI PDKLTLPEFV LQGVEEFTEN VAFVEAVTGK AVTYGDVVRD
1001: TKRLAKALTS LGLRKGQVMV VVLPNVAEYG IIALGIMSAG GVFSGANPTA LVSEIKKQVE ASGARGIITD STNFEKVKAL GLPVIVLGEE KIEGAVNWKD
1101: LLEAGDRSGD NNREKILQTD LCALPFSSGT TGLQKGVMLT HRNLIANLCS TLFSVRSEMI GQIVTLGLIP FFHIYGIVGI CCATMKNKGK VVAMSRYDLR
1201: LFLNALITHE VLFAPIVPPI ILNLVKNPIV DEFDLSKLKL RSVMTAAAPL APELLTAFEA KFPNVQAYGL TEHSCITLTH GDPDKGQGIA KRNSVGFILP
1301: NLEVKFIDPD TGRSLPKNTS GELCVRSQCV MQGYFENKEE TEKTIDEEGW LHTGDIGYID DDGDIFIVDR IKELIKYKGF QVAPAELEAI LLTHPSVEDV
1401: AVVPLPDEEA GEIPVACVVM NPKAKEKEED ILSFVAANVA HYKKIRAVHF VDSIPKSLSG KIMRRLLRDN ILSIKKTLF

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.