Factsheet for Bra017147.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
peroxisome 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036646.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02050.1	Bra036646.1-P	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18415	Canola	cytosol, mitochondrion	43.62	99.24
AT1G02050.1	Thale cress	mitochondrion	40.72	92.15
VIT_15s0021g02170.t01	Wine grape	cytosol	34.68	79.69
Bra000559.1-P	Field mustard	mitochondrion	34.9	79.59
KRH75257	Soybean	cytosol	34.34	79.12
PGSC0003DMT400095725	Potato	plastid	33.22	75.0
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	28.86	72.07
Bra011566.1-P	Field mustard	cytosol	28.3	64.54
Bra017681.1-P	Field mustard	cytosol	28.19	64.29
Bra034658.1-P	Field mustard	cytosol	27.85	63.52
TraesCS1D01G157500.1	Wheat	cytosol	27.4	62.82
TraesCS1A01G160300.1	Wheat	cytosol	27.29	62.56
Zm00001d032662_P001	Maize	plastid	27.18	62.31
TraesCS1B01G176300.1	Wheat	cytosol	27.18	62.31
Os10t0484800-01	Rice	cytosol	26.96	61.95
Zm00001d013991_P001	Maize	mitochondrion	27.07	57.48
EER91459	Sorghum	cytosol	28.64	52.78
HORVU1Hr1G042510.2	Barley	cytosol	28.19	51.85
Bra020688.1-P	Field mustard	cytosol	17.23	39.09
Bra008792.1-P	Field mustard	cytosol	17.11	38.73
Bra006224.1-P	Field mustard	cytosol	17.0	38.38
Bra023441.1-P	Field mustard	cytosol	16.67	37.82
Bra036307.1-P	Field mustard	cytosol	16.33	37.15

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	EnsemblPlantsGene:Bra017147	EnsemblPlants:Bra017147.1	EnsemblPlants:Bra017147.1-P	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_N	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M4DKW6
PFAM:PF00195	PFAM:PF02797	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI00025447F9	SEG:seg	:	:	:

Description

AT1G02050 (E=3e-200) | chalcone and stilbene synthase family protein

Coordinates

chrA04:-:16323460..16327496

Molecular Weight (calculated)

97104.5 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.338

Length

894 amino acids

Sequence
(BLAST)

001: MVRTTKPKSA ERVGKGKVTP MQVAFLVDRY LCDNRFLETR SVFRSEASSL ISKSPLREVP CSLIPLDDIL NEYISLKEQK VIVDQEKARL DQEKTRVQNL
101: LQGMQDVMNV YNSTAASAPP PPAITSSAAP TAIQVAASTS QPSNSIVVSP LGGAVHHSAP NLMSASLPGN KRVGNFTAPS STQSVTRKRK SPEVSLGAPP
201: PTSVSSKGVM KKIPRAAAAK GTNYLTFQPS PNTQTPVNNN SVANDSSDLT STVAKRLCYG PSDMSPPTTN SACPKTPQKQ LSPQQEVTPP TNCTILTKER
301: ITVSPNKQIG SYTVERSRIV SSFSPVKSSK RDHVKGRLNF DDDDEEATMH SDAPASGDLV SSSYSSGSGS GSEAEVDLFD IDFLNENFPF SEVLGDFDLG
401: CEGITDSCLP QPSDFHMETA SGSSPGSVNE NLVPDQVVSE FTSTVTEMIQ EKDMNTQGSD SMTTVKSITK CLRILSPVEY SASTTFNLNN QLILLPERER
501: EMSSSGMNGV KKQISTRRVA NPGKATVLAL GKAFPSQVVP QEHLVEGFLR DTKCDDPFIK EKLEHLCKTT TVKTRYTVLS REILDKYPEL TTEGSPTIKQ
601: RLEIANEAVV EMALEASLGC IKEWGRTVED ITHIVYVSSS EIRLPGGDLY LSAKLGLKSD VNRVMLYFLG CYGGVTGLRV AKDIAENNPG SRVLLTTSET
701: TILGFRPPNK ARPYDLVGAA LFGDGAAAVI IGADPLPSEA PFMELHYAVQ QFVPGTQTVI DGRLTEEGIN FKLGRDLPQK IEENIEEFCK KLMGKAGDDS
801: MEFNDMFWTV HPGGPAILNR LETKLKLGRE KLECSRRALV DYGNVSSNTI LYVMEYMRDE LKKKGDGAQE WGLGLAFGPG ITFEGLLLRS LAST

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.