Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003702_P001 | |
| Zm00001d039274_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02050.1 | Zm00001d003702_P001 | AT1G62940.1 | 23632852 |
| AT1G02050.1 | Zm00001d039274_P003 | AT1G62940.1 | 23632852 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032662_P001 | Maize | plastid | 87.17 | 94.1 |
| Os10t0484800-01 | Rice | cytosol | 79.1 | 85.6 |
| TraesCS1A01G160300.1 | Wheat | cytosol | 78.62 | 84.87 |
| TraesCS1B01G176300.1 | Wheat | cytosol | 78.15 | 84.36 |
| TraesCS1D01G157500.1 | Wheat | cytosol | 77.67 | 83.85 |
| EER91459 | Sorghum | cytosol | 89.79 | 77.94 |
| HORVU1Hr1G042510.2 | Barley | cytosol | 79.33 | 68.72 |
| KRH75257 | Soybean | cytosol | 56.06 | 60.82 |
| CDX93339 | Canola | mitochondrion | 56.53 | 60.56 |
| CDY18415 | Canola | cytosol, mitochondrion | 56.29 | 60.31 |
| VIT_15s0021g02170.t01 | Wine grape | cytosol | 55.58 | 60.15 |
| AT1G02050.1 | Thale cress | mitochondrion | 56.06 | 59.75 |
| AT4G00040.1 | Thale cress | cytosol, mitochondrion | 53.92 | 58.96 |
| CDX83215 | Canola | mitochondrion | 54.63 | 58.67 |
| CDY21499 | Canola | mitochondrion | 54.39 | 58.42 |
| PGSC0003DMT400095725 | Potato | plastid | 54.87 | 58.33 |
| Bra000559.1-P | Field mustard | mitochondrion | 54.16 | 58.16 |
| Solyc01g090600.2.1 | Tomato | cytosol, extracellular, mitochondrion, peroxisome | 47.27 | 55.59 |
| Zm00001d019478_P001 | Maize | cytosol | 49.41 | 49.88 |
| Zm00001d040483_P001 | Maize | cytosol | 30.4 | 43.1 |
| Zm00001d000438_P001 | Maize | cytosol, mitochondrion | 36.58 | 38.31 |
| Zm00001d021562_P001 | Maize | cytosol, mitochondrion | 36.58 | 38.31 |
| Zm00001d040479_P001 | Maize | mitochondrion | 36.1 | 38.19 |
| Zm00001d040497_P001 | Maize | mitochondrion | 35.63 | 37.88 |
| Zm00001d016014_P001 | Maize | cytosol, endoplasmic reticulum, mitochondrion | 34.68 | 36.78 |
| Zm00001d007403_P001 | Maize | cytosol | 33.73 | 35.41 |
| Zm00001d052673_P001 | Maize | cytosol | 33.25 | 35.0 |
| Zm00001d007717_P001 | Maize | mitochondrion, plastid | 27.79 | 33.62 |
| Zm00001d007400_P001 | Maize | cytosol | 31.83 | 31.9 |
| Zm00001d052676_P001 | Maize | plastid | 34.68 | 30.93 |
| Bra017147.1-P | Field mustard | cytosol, peroxisome, plastid | 57.48 | 27.07 |
| Zm00001d052675_P002 | Maize | plastid | 33.97 | 19.4 |
| Zm00001d052916_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 29.45 | 18.29 |
Protein Annotations
| MapMan:21.8.1.4 | Gene3D:3.40.47.10 | UniProt:A0A1D6GPA6 | ProteinID:AQK65005.1 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016740 |
| GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 |
| PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III | SUPFAM:SSF53901 | InterPro:Thiolase-like | UniParc:UPI0002217983 |
| EnsemblPlantsGene:Zm00001d013991 | EnsemblPlants:Zm00001d013991_P001 | EnsemblPlants:Zm00001d013991_T001 | SEG:seg | : | : |
Description
Type III polyketide synthase A
Coordinates
chr5:-:27692922..27694559
Molecular Weight (calculated)
45576.9 Da
IEP (calculated)
8.050
GRAVY (calculated)
-0.178
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLPWPGRTK KTTTVQHWKQ KGGPRSARAV TMTDTGSTDA NGKSQGSRGK AMLLALGKGF PDQVLPQEKV AASYLQESSC DDPDTRAKLE RLCTTTTVRT
101: RYTVMSKELL DKHPELKMEG TPTLTPRLDI CNAAVIDLGA AAARAALHEW GRPAADITHL IYISSSELRL PGGDLHLAAR LGLSPNTVRT SLLFLGCSGG
201: AAALRTAKDI AENNPGSRVL VTAAETTVLG FRPPSYDRPY DLVGAALFGD GASAVIIGAG PMAPAENPFL ELQFSTQEFL PGTDKVIDGN ISEEGINFKL
301: GRDLPEKIES RIEGFCRTLM NQVGIKDFND VFWAVHPGGP AILNRLEICL QLQPEKLKIS RKALMNYGNV SSNTIFYVLE YLRDELKKGT ISEDWGLILA
401: FGPGITFEGL LVQGVKKTFT S
101: RYTVMSKELL DKHPELKMEG TPTLTPRLDI CNAAVIDLGA AAARAALHEW GRPAADITHL IYISSSELRL PGGDLHLAAR LGLSPNTVRT SLLFLGCSGG
201: AAALRTAKDI AENNPGSRVL VTAAETTVLG FRPPSYDRPY DLVGAALFGD GASAVIIGAG PMAPAENPFL ELQFSTQEFL PGTDKVIDGN ISEEGINFKL
301: GRDLPEKIES RIEGFCRTLM NQVGIKDFND VFWAVHPGGP AILNRLEICL QLQPEKLKIS RKALMNYGNV SSNTIFYVLE YLRDELKKGT ISEDWGLILA
401: FGPGITFEGL LVQGVKKTFT S
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
Arabidopsis Description
PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.