Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU2Hr1G066630.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G02050.1 | HORVU2Hr1G066630.1 | AT1G62940.1 | 23632852 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G157500.1 | Wheat | cytosol | 77.57 | 96.67 |
TraesCS1B01G176300.1 | Wheat | cytosol | 77.37 | 96.41 |
TraesCS1A01G160300.1 | Wheat | cytosol | 77.16 | 96.15 |
Os10t0484800-01 | Rice | cytosol | 72.63 | 90.75 |
Zm00001d032662_P001 | Maize | plastid | 67.49 | 84.1 |
Zm00001d013991_P001 | Maize | mitochondrion | 68.72 | 79.33 |
EER91459 | Sorghum | cytosol | 72.84 | 72.99 |
VIT_15s0021g02170.t01 | Wine grape | cytosol | 49.79 | 62.21 |
KRH75257 | Soybean | cytosol | 49.59 | 62.11 |
CDX93339 | Canola | mitochondrion | 49.59 | 61.32 |
CDY18415 | Canola | cytosol, mitochondrion | 49.38 | 61.07 |
AT1G02050.1 | Thale cress | mitochondrion | 49.18 | 60.51 |
PGSC0003DMT400095725 | Potato | plastid | 49.18 | 60.35 |
AT4G00040.1 | Thale cress | cytosol, mitochondrion | 47.12 | 59.48 |
CDX83215 | Canola | mitochondrion | 47.53 | 58.93 |
CDY21499 | Canola | mitochondrion | 47.33 | 58.67 |
Bra000559.1-P | Field mustard | mitochondrion | 47.12 | 58.42 |
Solyc01g090600.2.1 | Tomato | cytosol, extracellular, mitochondrion, peroxisome | 42.8 | 58.1 |
HORVU5Hr1G000690.2 | Barley | cytosol, peroxisome | 43.21 | 45.95 |
HORVU6Hr1G055000.1 | Barley | cytosol, mitochondrion | 32.3 | 39.65 |
HORVU2Hr1G003280.1 | Barley | cytosol | 30.66 | 37.53 |
HORVU3Hr1G006040.1 | Barley | cytosol | 30.66 | 37.44 |
HORVU1Hr1G004830.1 | Barley | cytosol | 30.45 | 37.28 |
HORVU1Hr1G089540.1 | Barley | mitochondrion | 30.04 | 36.59 |
HORVU6Hr1G003020.2 | Barley | cytosol | 31.07 | 36.56 |
HORVU2Hr1G116390.2 | Barley | cytosol | 29.63 | 36.18 |
HORVU6Hr1G074060.2 | Barley | cytosol | 29.84 | 35.98 |
HORVU2Hr1G005220.3 | Barley | cytosol | 29.22 | 35.95 |
HORVU4Hr1G003250.1 | Barley | cytosol | 30.25 | 35.08 |
HORVU7Hr1G024480.2 | Barley | cytosol | 28.4 | 35.03 |
HORVU7Hr1G009190.1 | Barley | cytosol | 27.78 | 34.97 |
HORVU5Hr1G093950.1 | Barley | cytosol | 28.81 | 34.74 |
HORVU1Hr1G064330.1 | Barley | cytosol | 28.19 | 34.68 |
HORVU2Hr1G002640.1 | Barley | cytosol | 27.78 | 34.26 |
HORVU2Hr1G004170.4 | Barley | plastid | 29.63 | 33.26 |
HORVU7Hr1G020920.2 | Barley | cytosol, peroxisome | 29.42 | 30.82 |
Bra017147.1-P | Field mustard | cytosol, peroxisome, plastid | 51.85 | 28.19 |
Protein Annotations
MapMan:21.8.1.4 | Gene3D:3.40.47.10 | UniProt:A0A287FAM9 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016740 | GO:GO:0016746 |
GO:GO:0016747 | EnsemblPlantsGene:HORVU1Hr1G042510 | EnsemblPlants:HORVU1Hr1G042510.2 | InterPro:IPR016039 | PFAM:PF00195 | PFAM:PF02797 |
PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III | SUPFAM:SSF53901 | InterPro:Thiolase-like | UniParc:UPI000B479ECF |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:308765150..308777342
Molecular Weight (calculated)
52721.6 Da
IEP (calculated)
8.327
GRAVY (calculated)
-0.273
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEPKKGVRG KILHHAALAQ KLEENQMTSP QPTILFSFHS CRRSLRPNTK QPCKPEPKQP HGEHPLLKAN HPSRTQRNHR SGEILNLRQK EATSVCESAM
101: SGLGSIGGGG NGRSHGSGGK AKLLALGKGL PEQVLPQEKL VETYLQDTSC DDPATRAKLE RLCKTTTVRT RYTVMSKELL DEHPELKTEG TPTLTPRLDI
201: CNAAVLELGA AAARAALGEW GRPAAHITHL VYISSSELRL PGGDLFLATR LGLSPNTVRT SLLFLGCSGG AAALRTAKDI AENNPGSRVL VIAAETTVLG
301: FRPPSADRPY DLVGAALFGD GASAAIIGAS PISAEEDPFL ELEFSTQEFL PGTDKVIDGK ISEEGINFKL GRDLPEKIES RIEGFCRILM DKVGIKKFND
401: VFWAVHPGGP AILNRLEVCL ELDPDKLKIS RKALMNYGNV SSNTVFYVLE YLRDELKKGT IREEWGLILA FGPGITFEGM LVRGIN
101: SGLGSIGGGG NGRSHGSGGK AKLLALGKGL PEQVLPQEKL VETYLQDTSC DDPATRAKLE RLCKTTTVRT RYTVMSKELL DEHPELKTEG TPTLTPRLDI
201: CNAAVLELGA AAARAALGEW GRPAAHITHL VYISSSELRL PGGDLFLATR LGLSPNTVRT SLLFLGCSGG AAALRTAKDI AENNPGSRVL VIAAETTVLG
301: FRPPSADRPY DLVGAALFGD GASAAIIGAS PISAEEDPFL ELEFSTQEFL PGTDKVIDGK ISEEGINFKL GRDLPEKIES RIEGFCRILM DKVGIKKFND
401: VFWAVHPGGP AILNRLEVCL ELDPDKLKIS RKALMNYGNV SSNTVFYVLE YLRDELKKGT IREEWGLILA FGPGITFEGM LVRGIN
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
Arabidopsis Description
PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.