Factsheet for HORVU6Hr1G003020.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G015500.1	Wheat	cytosol, plastid	92.25	93.38
TraesCS6B01G022500.1	Wheat	cytosol	92.49	92.94
TraesCS6D01G018500.1	Wheat	plastid	90.56	85.39
EES15184	Sorghum	cytosol	67.8	68.29
Os10t0177300-00	Rice	cytosol, mitochondrion, peroxisome	48.91	63.72
Os10t0158400-00	Rice	cytosol	60.77	63.07
Os05t0212900-00	Rice	cytosol	59.81	63.01
Os10t0167900-00	Rice	cytosol	59.81	61.9
Os10t0168500-00	Rice	cytosol, peroxisome, plastid	38.98	60.75
Os05t0213100-00	Rice	cytosol, peroxisome, plastid	60.77	58.78
Os10t0162856-00	Rice	cytosol	61.02	58.2
Os05t0212600-00	Rice	cytosol	42.37	57.95
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	54.72	56.93
HORVU6Hr1G074060.2	Barley	cytosol	51.57	52.85
HORVU6Hr1G055000.1	Barley	cytosol, mitochondrion	50.12	52.27
HORVU2Hr1G003280.1	Barley	cytosol	49.88	51.89
HORVU7Hr1G009190.1	Barley	cytosol	48.18	51.55
HORVU7Hr1G024480.2	Barley	cytosol	48.67	51.02
HORVU5Hr1G093950.1	Barley	cytosol	49.64	50.87
HORVU2Hr1G002640.1	Barley	cytosol	47.94	50.25
HORVU4Hr1G003250.1	Barley	cytosol	50.61	49.88
HORVU2Hr1G005220.3	Barley	cytosol	44.31	46.33
HORVU1Hr1G004830.1	Barley	cytosol	44.07	45.84
HORVU2Hr1G116390.2	Barley	cytosol	43.83	45.48
HORVU1Hr1G089540.1	Barley	mitochondrion	43.83	45.36
HORVU3Hr1G006040.1	Barley	cytosol	42.86	44.47
HORVU7Hr1G020920.2	Barley	cytosol, peroxisome	47.94	42.67
HORVU2Hr1G004170.4	Barley	plastid	44.07	42.03
HORVU1Hr1G064330.1	Barley	cytosol	40.19	42.03
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	36.8	33.26
HORVU1Hr1G042510.2	Barley	cytosol	36.56	31.07
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	2.66	0.58

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	EMBL:AK362160	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	UniProt:F2DE43
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:HORVU6Hr1G003020	EnsemblPlants:HORVU6Hr1G003020.2	InterPro:IPR016039	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF23	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI000200615F	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DE43]

Coordinates

chrchr6H:-:7247699..7249687

Molecular Weight (calculated)

44103.8 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.084

Length

413 amino acids

Sequence
(BLAST)

001: MGSIGTTNGN GIGHGSAAMA APAWRQHAHA EGPAAILGIG TANPTGVEIP QDIFAENLFR VTKSDHLTHL QHKLTRICEK TGIDKRHFHL TEETLVAHPE
101: LYDHEAPSLD NRIAMTVDAV PKLAQRAADK AIADWGRPAS DITHLVFSTY SAWGAPSADL RLATLLGLRP TVSRTILSLH GCYGGGRALN LARELAENNR
201: GARVLVACAE ITLVCFGGPD GGNLVGHALF GDGAGAVIVG AGPFRDGEQS PIFEMVHATQ TTLPKTEHAL GMQVSGSGVD FHLAIQVPTL IGQNVERCLL
301: HAFRGGDDDD GDGGAARLPC PLSGNGKWND LFWAVHPGGR PILDNIDKVL ELEPEKLAAS RHVLREYGNM SGATIVFVLD ELRRRRSMLP EWGAMLAFGP
401: GVTIETMVLR CPR

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.