Factsheet for Zm00001d016014_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

mitochondrion 3
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G041300.1	Wheat	cytosol	57.68	59.33
EES15184	Sorghum	cytosol	59.95	58.05
TraesCS2D01G030600.1	Wheat	mitochondrion	56.42	58.03
Os05t0212900-00	Rice	cytosol	57.18	57.91
Os10t0158400-00	Rice	cytosol	57.68	57.54
TraesCS4B01G357800.1	Wheat	cytosol	43.07	57.38
Os10t0167900-00	Rice	cytosol	57.18	56.89
TraesCS4D01G351300.1	Wheat	mitochondrion	56.42	56.28
Os10t0177300-00	Rice	cytosol, mitochondrion, peroxisome	44.84	56.15
TraesCS6A01G015300.1	Wheat	cytosol	56.93	56.08
TraesCS4B01G357100.1	Wheat	mitochondrion	46.35	55.93
TraesCS5A01G526900.1	Wheat	cytosol, mitochondrion	56.17	55.89
TraesCS6B01G022300.1	Wheat	cytosol	56.42	55.72
TraesCS6B01G022500.1	Wheat	cytosol	56.93	54.99
TraesCS6A01G015500.1	Wheat	cytosol, plastid	56.42	54.9
Zm00001d000438_P001	Maize	cytosol, mitochondrion	55.42	54.73
Zm00001d021562_P001	Maize	cytosol, mitochondrion	55.42	54.73
HORVU6Hr1G003020.2	Barley	cytosol	56.93	54.72
Os05t0212600-00	Rice	cytosol	41.06	53.97
Os10t0162856-00	Rice	cytosol	58.69	53.81
Os05t0213100-00	Rice	cytosol, peroxisome, plastid	57.68	53.63
Os10t0168500-00	Rice	cytosol, peroxisome, plastid	35.77	53.58
Zm00001d040497_P001	Maize	mitochondrion	52.9	53.03
TraesCS4B01G357600.1	Wheat	mitochondrion	31.99	52.48
TraesCS4B01G357700.1	Wheat	mitochondrion	31.23	52.32
Zm00001d040483_P001	Maize	cytosol	39.04	52.19
Zm00001d040479_P001	Maize	mitochondrion	51.89	51.76
TraesCS6D01G018500.1	Wheat	plastid	56.42	51.14
Zm00001d052673_P001	Maize	cytosol	50.13	49.75
Zm00001d007403_P001	Maize	cytosol	50.13	49.63
Zm00001d007717_P001	Maize	mitochondrion, plastid	40.55	46.26
Zm00001d007400_P001	Maize	cytosol	47.86	45.24
Zm00001d052676_P001	Maize	plastid	51.39	43.22
Zm00001d032662_P001	Maize	plastid	36.78	37.44
Zm00001d019478_P001	Maize	cytosol	37.03	35.25
Zm00001d013991_P001	Maize	mitochondrion	36.78	34.68
Zm00001d052675_P002	Maize	plastid	49.87	26.87
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	41.31	24.19
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.78	0.79

Protein Annotations

EntrezGene:103626945	Gene3D:3.40.47.10	MapMan:50.2.3	UniProt:A0A1D6H540	ProteinID:AQK69939.1	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797
PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF34	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI0002210DBE	EnsemblPlantsGene:Zm00001d016014	EnsemblPlants:Zm00001d016014_P001	EnsemblPlants:Zm00001d016014_T001	SEG:seg	:

Description

Type III polyketide synthase B

Coordinates

chr5:+:139697094..139700302

Molecular Weight (calculated)

42394.0 Da

IEP (calculated)

6.640

GRAVY (calculated)

0.056

Length

397 amino acids

Sequence
(BLAST)

001: MGSAPVNVCV SRRGQQAEGP AAVLAIGTAN PPHCVHQDEF PDYYFRMSRS EHLTDLKVKL KRICEKSGIE KRFFHINEEI LAAHPDFNDR EKPSLQARIE
101: MTVTEVPKLA ARAAAKAIAE WGRPATDITH VVFSTYSGAR SPSADLRLAS LLGLRPSVCR TTLSLHGCSG GVRALHLAKD IAENNHGARV LVVCAEVSLI
201: SYSGPTDGCV DSVLGLALFG DGAGAVILGA GPVSGSERPL FETVCAAQTT VPMTEAAITT QFAPGGMEYR IGKQVPGIVE QTIRQCLLDV TGPLGIDVVT
301: WNDLFWAVHC GGRAILDSVE AALGLGSQKL AASRHVLREY GNMSSAAVVF VLEEVHRRLT SKNADGETAE WGVMVAFGPG VTVEIMVLRA TTNLEEK

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.