Factsheet for Zm00001d032662_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003702_P001
Zm00001d039274_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02050.1	Zm00001d003702_P001	AT1G62940.1	23632852
AT1G02050.1	Zm00001d039274_P003	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013991_P001	Maize	mitochondrion	94.1	87.17
TraesCS1A01G160300.1	Wheat	cytosol	85.64	85.64
TraesCS1B01G176300.1	Wheat	cytosol	85.38	85.38
TraesCS1D01G157500.1	Wheat	cytosol	84.87	84.87
Os10t0484800-01	Rice	cytosol	84.62	84.83
EER91459	Sorghum	cytosol	94.87	76.29
HORVU1Hr1G042510.2	Barley	cytosol	84.1	67.49
KRH75257	Soybean	cytosol	61.54	61.86
CDX93339	Canola	mitochondrion	62.31	61.83
CDY18415	Canola	cytosol, mitochondrion	62.05	61.58
VIT_15s0021g02170.t01	Wine grape	cytosol	61.28	61.44
AT1G02050.1	Thale cress	mitochondrion	61.79	61.01
AT4G00040.1	Thale cress	cytosol, mitochondrion	60.0	60.78
CDX83215	Canola	mitochondrion	60.51	60.2
CDY21499	Canola	mitochondrion	60.26	59.95
Bra000559.1-P	Field mustard	mitochondrion	60.0	59.69
PGSC0003DMT400095725	Potato	plastid	60.26	59.34
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	52.05	56.7
Zm00001d019478_P001	Maize	cytosol	53.08	49.64
Zm00001d040483_P001	Maize	cytosol	32.56	42.76
Zm00001d000438_P001	Maize	cytosol, mitochondrion	39.74	38.56
Zm00001d021562_P001	Maize	cytosol, mitochondrion	39.74	38.56
Zm00001d040479_P001	Maize	mitochondrion	38.46	37.69
Zm00001d040497_P001	Maize	mitochondrion	37.95	37.37
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	37.44	36.78
Zm00001d007403_P001	Maize	cytosol	35.64	34.66
Zm00001d052673_P001	Maize	cytosol	35.13	34.25
Zm00001d007717_P001	Maize	mitochondrion, plastid	29.74	33.33
Zm00001d007400_P001	Maize	cytosol	34.87	32.38
Zm00001d052676_P001	Maize	plastid	36.92	30.51
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	62.31	27.18
Zm00001d052675_P002	Maize	plastid	36.41	19.27
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	32.82	18.88

Protein Annotations

EntrezGene:100284244	MapMan:21.8.1.4	Gene3D:3.40.47.10	UniProt:B4FUZ6	EMBL:BT040934	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	ProteinID:ONM05675.1	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI00017B7FA6	EnsemblPlantsGene:Zm00001d032662	EnsemblPlants:Zm00001d032662_P001	EnsemblPlants:Zm00001d032662_T001	SEG:seg

Description

Type III polyketide synthase A

Coordinates

chr1:-:233440839..233442623

Molecular Weight (calculated)

42112.8 Da

IEP (calculated)

7.371

GRAVY (calculated)

-0.095

Length

390 amino acids

Sequence
(BLAST)

001: MTGSGSTGAN GKSQSSRAKA MLLALGKSFP DQVLPQEKVV ESYLQESSCD DPATRAKLQR LCTTTTVKTR YTVMSKELLD KHPELKMEGT PTLTPRLDIC
101: NAAVIDLGAA AARAALDEWG RPAADITHLI YISSSDLRLP GGDLHLAARL GLSPNTVRTS LLFLGCSGGA AALRTAKDIA ENNPGSRVLV TAAETTVLGF
201: RPPSYDRPYD LVGAALFGDG ASAVIIGAGP MTPAENPFLE LEFSTQEFLP GTDKVIDGKI SEEGINFKLG RDLPEKIESR IEGFCRTLMN KVGIKDFNDI
301: FWAVHPGGPA ILNRLEFCLK LQPEKLKISR KALMNYGNVS SNTIFYVLEY LRDELKKGAI SEEWGLILAF GPGITFEGLL VRGVKKTFTS

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.