Factsheet for Zm00001d039274_P003

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013991_P001	endoplasmic reticulum
Zm00001d019478_P001	endoplasmic reticulum
Zm00001d032662_P001	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	Zm00001d013991_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d032662_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d013991_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d032662_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d019478_P001	AT4G34850.1	23632852
AT1G62940.1	Zm00001d019478_P001	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99996	Sorghum	plastid	54.66	91.07
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	39.09	87.36
Zm00001d003702_P001	Maize	plastid	51.59	85.25
Os04t0310800-01	Rice	peroxisome	46.33	84.14
TraesCS2B01G291100.1	Wheat	plastid	50.69	82.55
TraesCS2D01G272200.1	Wheat	plastid	50.5	82.23
TraesCS2A01G272900.1	Wheat	plastid	50.4	81.94
GSMUA_Achr6P36020_001	Banana	peroxisome	34.52	70.3
VIT_01s0010g03720.t01	Wine grape	peroxisome	35.91	65.23
Solyc02g088710.2.1	Tomato	peroxisome	35.22	64.2
CDY39816	Canola	peroxisome	34.13	63.7
AT1G62940.1	Thale cress	peroxisome	34.13	63.47
KRH46374	Soybean	peroxisome	34.62	63.11
KRG98485	Soybean	peroxisome	34.42	62.75
Zm00001d033055_P001	Maize	peroxisome	21.43	39.27
Zm00001d027711_P003	Maize	extracellular	21.43	38.92
Zm00001d050224_P002	Maize	peroxisome	21.03	37.86
Zm00001d027519_P001	Maize	plasma membrane	20.24	37.02
Zm00001d032103_P001	Maize	peroxisome	20.24	36.76
Zm00001d015459_P003	Maize	peroxisome	21.03	36.12
Zm00001d046915_P001	Maize	extracellular	21.92	34.59
Zm00001d019957_P002	Maize	peroxisome	19.44	34.45
Zm00001d018660_P001	Maize	peroxisome	19.15	34.28
Zm00001d012144_P001	Maize	plastid	12.9	31.71
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	19.94	31.7
Zm00001d030132_P002	Maize	peroxisome	19.15	30.35
Bra036646.1-P	Field mustard	peroxisome	41.37	28.19
CDY03253	Canola	peroxisome	42.66	27.87

Protein Annotations

EntrezGene:100193778	MapMan:12.5.1.14.2	MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	UniProt:A0A1D6MEX0
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016874	ProteinID:ONM28180.1	ProteinID:ONM28181.1	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	SUPFAM:SSF56801	UniParc:UPI00084498F3
EnsemblPlantsGene:Zm00001d039274	EnsemblPlants:Zm00001d039274_P003	EnsemblPlants:Zm00001d039274_T003	SEG:seg	:	:

Description

4-coumarate--CoA ligase-like 1

Coordinates

chr3:+:903701..918970

Molecular Weight (calculated)

109953.0 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.065

Length

1008 amino acids

Sequence
(BLAST)

0001: MATPSLPTQI VEFNYKAIED KLKRLALEVS HHENNIRFLK SQLNTVEEAC VDLGIKLGNY HSSVAAVVNN DTSAQEAEQR TIRSILDQGK TAAGIICQLK
0101: VRHHELASKM PLMKDILGFV ATLGKVNNDN LSRLLTEYLG MDNMLALVCK TYDGVKGLEK YDKDGIIDNT SGIHGLGRSV GKFLDGRFTV FCLENLRPFS
0201: GDVIIDDPQR KLILHRPRLP GGESPPGFLD FAVNMIHLDR AHLRFLTASG HGLRETLFYT LFSHLQVYKT RTDIQSALPL IKDGAVSLDG GLLRPNGSFC
0301: LGHSKNLEVK FPVTTDVSSL PENVAEMEEQ VKRKNWEKEM VLEDMKREED LLKQVKELYR KQKQELMDYV TQPAVTQPSS TRSKAMTQPI LTCTPPFLTP
0401: RKNCVATTNM PSPSSRGPMP RPPVVSSNAN AAPFLQLHTH NHHHQQQLRM GDAAIAAVHL HESEEEHIFR SRFPPVAVPD DVTVPEFVLA DAEAYADKTA
0501: LVEAAPGGRS YTYGELVRDV ARFARALRSI GVRRGHVVVV ALPNLAVYPV VSLGIMSAGA VFSGVNPRAV AAEIKKQVED SEARLVVADA VAYDKVKDAG
0601: VPVIGIGDVA RLPGAIGWDE LLAMADRAGA PVVALEPAQQ SDLCALPYSS GTTGVSKGVM LSHRNLVSSL CSSMFAVGQE LVGQVVTLGL MPFFHIYGIT
0701: GICCATLRHK GTVVVMDRFD LRAFLGALLT HRVMFAPVVP PVMLAMVKSP VADEFDLSGL ALRSVMTAAA PLAPDLLAAF ERKFPGVQVE EAYGLTEHSC
0801: ITLTHASGGG EDVGSAVQVA KKKSVGFILP NLEVKFVDPD TGRSLPKNTP GEICVRSQAV MQGYYRKKEE TERTIDAAGW LHTGDVGYID DDGDVFIVDR
0901: IKELIKYKGF QVAPAELEAI LLSHPSVEDA AVFGLPDEEA GEVPASCVVR RRGAPESEAD MMAYVAGRVA SYKKLRLLRF VDAIPKSVSG KILRRQLRDE
1001: FVKKTAAA

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.