Factsheet for Solyc02g088710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090600.2.1	endoplasmic reticulum
Solyc01g111070.2.1	endoplasmic reticulum
Solyc10g009390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	Solyc10g009390.2.1	AT1G01280.1	23632852
AT1G62940.1	Solyc01g090600.2.1	AT1G02050.1	23632852
AT1G62940.1	Solyc01g090600.2.1	AT1G02050.1	23632852
AT1G62940.1	Solyc01g111070.2.1	AT4G34850.1	23632852
AT1G62940.1	Solyc01g111070.2.1	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g03720.t01	Wine grape	peroxisome	75.41	75.14
KRH46374	Soybean	peroxisome	72.51	72.51
KRG98485	Soybean	peroxisome	71.79	71.79
AT1G62940.1	Thale cress	peroxisome	70.16	71.59
CDY39816	Canola	peroxisome	69.62	71.3
GSMUA_Achr6P36020_001	Banana	peroxisome	61.84	69.09
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	54.07	66.3
Os04t0310800-01	Rice	peroxisome	63.29	63.06
EER99996	Sorghum	plastid	64.92	59.34
Zm00001d003702_P001	Maize	plastid	64.92	58.85
TraesCS2B01G291100.1	Wheat	plastid	65.1	58.16
TraesCS2A01G272900.1	Wheat	plastid	65.1	58.06
TraesCS2D01G272200.1	Wheat	plastid	64.92	58.0
KXG26308	Sorghum	peroxisome	41.23	41.83
Solyc06g068650.2.1	Tomato	peroxisome	37.25	37.94
Solyc03g117870.2.1	Tomato	plastid	37.07	37.61
Solyc12g042460.1.1	Tomato	peroxisome	35.8	36.13
Solyc11g069050.1.1	Tomato	peroxisome	35.08	36.06
Solyc07g008360.1.1	Tomato	peroxisome	36.71	35.74
Zm00001d039274_P003	Maize	peroxisome	64.2	35.22
Solyc12g094520.1.1	Tomato	plastid	34.72	34.85
Solyc03g097030.2.1	Tomato	peroxisome	35.44	34.39
Solyc11g007970.1.1	Tomato	peroxisome	34.18	33.45
Solyc08g076300.2.1	Tomato	peroxisome	32.19	31.01
Solyc03g111170.2.1	Tomato	nucleus	30.92	30.98
Bra036646.1-P	Field mustard	peroxisome	70.16	26.23
CDY03253	Canola	peroxisome	69.98	25.08

Protein Annotations

MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031956	GO:GO:0046949	GO:GO:0080110	UniProt:K4BC26	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	SUPFAM:SSF56801	EnsemblPlantsGene:Solyc02g088710.2
EnsemblPlants:Solyc02g088710.2.1	TMHMM:TMhelix	UniParc:UPI000276889D	SEG:seg	:	:

Description

4-coumarate--CoA ligase-like 1 [Source:Projected from Arabidopsis thaliana (AT1G62940) UniProtKB/Swiss-Prot;Acc:Q9LQ12]

Coordinates

chr2:+:50696093..50698634

Molecular Weight (calculated)

61255.1 Da

IEP (calculated)

5.963

GRAVY (calculated)

-0.055

Length

553 amino acids

Sequence
(BLAST)

001: METHVVECSQ KQEEDEHIFR SRYPPVHVPD NVTLPEFVLH NVELYADRLA FVDATTGKGY TYGEVERDIR RFAKALRSLG LRKGRVVLVV LPNVPEYAIV
101: ALGIMAAGGV FSGANPAAHS SEIMKQVESA DGKLIVSDLP TYHKVKDCGL PVIILGEERA EGTIHWDELL EAADRASSRT DHITNQEDEI VQQSDLCALP
201: FSSGTTGLSK GVMLTHRNLV ANLCSTLFSI SPEMIGQVTI LGLIPFFHIY GITGICCATI RNKGKVVVMR RYELRAFLNA LIIHEVSFAP IVPPIILALV
301: KNPIVDEFDL KKLKLRSIMT AAAPLAPEIL NEFEKKFPDV QVQEAYGMTE HSCITLSHSN QHIAKRNSVG FILPNLEVKF VDPDTGRSLP KNTPGEICVK
401: SQCVMKGYYK NESETSLTID TDGWLHTGDI GYIDDDGDIF LVDRIKELIK YKGFQVAPAE LEGILLTHPS VEDTAVVGLP DEEAGEIPAA WVVLNSKAKE
501: SHEDIISYVA STVAQYKRVR LVQFVDSIPK SPSGKIMRRL IKEKMLERLK EGT

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.