Factsheet for VIT_01s0010g03720.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g01460.t01	endoplasmic reticulum
VIT_15s0021g02170.t01	endoplasmic reticulum
VIT_15s0046g00330.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	VIT_15s0046g00330.t01	AT1G01280.1	23632852
AT1G62940.1	VIT_15s0021g02170.t01	AT1G02050.1	23632852
AT1G62940.1	VIT_15s0021g02170.t01	AT1G02050.1	23632852
AT1G62940.1	VIT_03s0038g01460.t01	AT4G34850.1	23632852
AT1G62940.1	VIT_03s0038g01460.t01	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46374	Soybean	peroxisome	75.68	75.95
KRG98485	Soybean	peroxisome	75.14	75.41
Solyc02g088710.2.1	Tomato	peroxisome	75.14	75.41
AT1G62940.1	Thale cress	peroxisome	72.43	74.17
CDY39816	Canola	peroxisome	71.89	73.89
GSMUA_Achr6P36020_001	Banana	peroxisome	63.6	71.31
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	56.22	69.18
Os04t0310800-01	Rice	peroxisome	65.05	65.05
EER99996	Sorghum	plastid	66.13	60.66
TraesCS2B01G291100.1	Wheat	plastid	67.03	60.1
Zm00001d003702_P001	Maize	plastid	65.95	60.0
TraesCS2A01G272900.1	Wheat	plastid	67.03	60.0
TraesCS2D01G272200.1	Wheat	plastid	66.67	59.77
KXG26308	Sorghum	peroxisome	42.52	43.3
VIT_11s0052g01090.t01	Wine grape	peroxisome	37.66	38.14
VIT_06s0061g00450.t01	Wine grape	peroxisome	37.12	37.87
VIT_16s0039g02040.t01	Wine grape	peroxisome	36.94	37.41
VIT_11s0052g01110.t01	Wine grape	peroxisome	36.22	37.29
VIT_13s0019g05260.t01	Wine grape	peroxisome	34.59	37.21
Zm00001d039274_P003	Maize	peroxisome	65.23	35.91
VIT_18s0001g00290.t01	Wine grape	peroxisome	35.5	35.88
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	34.95	35.34
VIT_08s0007g05050.t01	Wine grape	plastid	33.69	35.28
VIT_14s0171g00300.t01	Wine grape	peroxisome	32.79	33.52
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	32.25	32.55
VIT_14s0171g00290.t01	Wine grape	peroxisome	31.71	32.53
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	32.07	32.36
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	30.63	29.77
Bra036646.1-P	Field mustard	peroxisome	72.79	27.32
CDY03253	Canola	peroxisome	72.61	26.12

Protein Annotations

EntrezGene:100264367	wikigene:100264367	MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CBI27665	ProteinID:CBI27665.3	UniProt:D7TAZ2	EMBL:FN595754
GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0031956
GO:GO:0046949	GO:GO:0080110	EntrezGene:LOC100264367	wikigene:LOC100264367	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI00015CCEF2
ArrayExpress:VIT_01s0010g03720	EnsemblPlantsGene:VIT_01s0010g03720	EnsemblPlants:VIT_01s0010g03720.t01	RefSeq:XP_003631332	RefSeq:XP_003631332.1	RefSeq:XP_010655977.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:21076452..21078724

Molecular Weight (calculated)

60567.5 Da

IEP (calculated)

6.014

GRAVY (calculated)

0.027

Length

555 amino acids

Sequence
(BLAST)

001: MGTHLQASAQ DNEHIFRSQH QAVPVPDNMT LPDFVLQDAE LYAEKVAFVE AVTGKEYTYG EVVRDVRRFA KALRSIGLRK GRVVVVVLPN VAEYAIVALG
101: IMAAGGVFSG ANPAGHASEI KKQVEAADAK LVVTNGAMYE KVKSLELPVI VMGEEHVAGA INWGELLEAA DRANTDTISE DVHQNDLCAL PFSSGTTGIS
201: KGVMLTHRNL VANLCSTLFS VGPEMVGQIT ILGLMPFFHI YGITGICCAT LRNKGKVVVI GRYELRTFLN ALITHEITFA PIVPPIILAL VKNPIVEEFD
301: LSRLKLRAVM TAAAPLAPEL LSAFEKKFPS VQVQEAYGLT EHSCITLTHG DPTKGHATAK KNSVGFILPN MELKFIDPET GISLPKNTPG EICVRSQCVM
401: QGYYKNEEET ARTIDNNGWL HTGDIGYIDD DGDVFVVDRI KELIKYKGFQ VAPAELEAIL LSHPSVEDTA VVSLPDEEAG EIPAACVVLN PEAKETEEEI
501: VKYVASNVAQ YKRVRVVHFV ETIPKSPSGK IMRRLLREKM LEKMKNNTKS GAILP

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.