Factsheet for VIT_06s0061g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
extracellular 1
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25085	Soybean	peroxisome	40.81	72.79
PGSC0003DMT400020978	Potato	peroxisome	70.22	70.61
Solyc11g069050.1.1	Tomato	peroxisome	68.93	69.7
CDY46375	Canola	peroxisome	69.3	69.56
Bra029561.1-P	Field mustard	peroxisome	68.93	69.19
CDY39155	Canola	peroxisome	68.93	69.19
HORVU4Hr1G072130.2	Barley	mitochondrion, peroxisome	28.86	68.86
KRH22842	Soybean	peroxisome, plastid	67.28	67.78
AT4G05160.1	Thale cress	peroxisome	67.65	67.65
KRH30593	Soybean	peroxisome	67.65	65.95
CDY46376	Canola	peroxisome	64.71	65.31
CDY39153	Canola	peroxisome	64.52	65.12
VIT_08s0007g05050.t01	Wine grape	plastid	62.32	63.96
GSMUA_Achr5P19650_001	Banana	peroxisome	54.23	60.7
GSMUA_Achr8P14210_001	Banana	peroxisome	54.78	60.08
KXG40154	Sorghum	peroxisome	60.11	59.13
Zm00001d027711_P003	Maize	extracellular	59.74	58.56
Bra029560.1-P	Field mustard	peroxisome	57.17	58.24
Os03t0152400-01	Rice	plasma membrane	58.64	57.79
TraesCS4A01G036200.1	Wheat	peroxisome	58.09	57.56
TraesCS4D01G268400.1	Wheat	peroxisome	57.54	57.22
TraesCS4B01G269200.1	Wheat	peroxisome	57.9	56.76
Zm00001d033055_P001	Maize	peroxisome	56.62	56.0
OQU91476	Sorghum	peroxisome	56.8	55.48
VIT_13s0019g05260.t01	Wine grape	peroxisome	41.18	43.41
VIT_18s0001g00290.t01	Wine grape	peroxisome	42.65	42.26
VIT_16s0039g02040.t01	Wine grape	peroxisome	41.73	41.42
VIT_11s0052g01110.t01	Wine grape	peroxisome	40.81	41.19
VIT_11s0052g01090.t01	Wine grape	peroxisome	41.18	40.88
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	40.99	40.62
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	40.99	40.55
VIT_14s0171g00300.t01	Wine grape	peroxisome	40.44	40.52
VIT_14s0171g00290.t01	Wine grape	peroxisome	38.97	39.19
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	40.81	38.88
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	38.05	37.64
VIT_01s0010g03720.t01	Wine grape	peroxisome	37.87	37.12
HORVU4Hr1G072150.1	Barley	peroxisome	35.48	34.65

Protein Annotations

EntrezGene:100267198	wikigene:100267198	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CCB44233	ProteinID:CCB44233.1	UniProt:F6GW98	EMBL:FN594957
GO:GO:0003674	GO:GO:0003824	GO:GO:0004321	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009695
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	EntrezGene:LOC100267198	wikigene:LOC100267198
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF310	SUPFAM:SSF56801
TIGR:TC64264	TMHMM:TMhelix	UniParc:UPI00015C9DDD	ArrayExpress:VIT_06s0061g00450	EnsemblPlantsGene:VIT_06s0061g00450	EnsemblPlants:VIT_06s0061g00450.t01
unigene:Vvi.10370	RefSeq:XP_002276353	RefSeq:XP_002276353.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:17904700..17912115

Molecular Weight (calculated)

59498.1 Da

IEP (calculated)

9.354

GRAVY (calculated)

0.117

Length

544 amino acids

Sequence
(BLAST)

001: MEKSGYGRDG IYRSLSPPLV LPKDPNLSLV SFLFRKASSY PRRPALIEAH SGETVNFAQF KSMVIKVSHG LTRLGLKKND VVLIFAPNSI QYPLCFFGVI
101: AIGAIATTAN PLYTVAEIQK QVKDSNAKLV ITIPQLWEKV KALNLPAVIL DSADTSKDTI QSPLKITYFS DLVKMAGEVS HFPKVSITQG DTAALLYSSG
201: TTGASKGVIL THGNFVAAAL MVTMDEELMG EMHNVFLCFL PMFHVFGLAV VMCAQLQMGY TIVSMPKFDL DVALKSIEKY RVTHMWLVPP VMLALVKQGK
301: LDRYDISSLK HIGSGAAPLG KELMEECAKS LPHVAVGQGY GMTETCGIVS KEIPKIGIQH TGSTGPLVSG VEAQIISVDT LKPLPPNQLG EIWVRGPNMM
401: KGYFNNPQAT KLTIDKKGWV HTGDVGYFDE QGKLFVVDRI KELIKYKGFQ VAPAELEALL VSHPEILDAV VIPFPDAEAG EVPIAYVVRS PNSSLTEEDV
501: KTFIANQVAP FKKLRRVSFI NTVPKSASGK ILRRELIEKV RAKL

Best Arabidopsis Sequence Match ( AT4G05160.1 )
(BLAST)

001: MEKSGYGRDG IYRSLRPTLV LPKDPNTSLV SFLFRNSSSY PSKLAIADSD TGDSLTFSQL KSAVARLAHG FHRLGIRKND VVLIFAPNSY QFPLCFLAVT
101: AIGGVFTTAN PLYTVNEVSK QIKDSNPKII ISVNQLFDKI KGFDLPVVLL GSKDTVEIPP GSNSKILSFD NVMELSEPVS EYPFVEIKQS DTAALLYSSG
201: TTGTSKGVEL THGNFIAASL MVTMDQDLMG EYHGVFLCFL PMFHVFGLAV ITYSQLQRGN ALVSMARFEL ELVLKNIEKF RVTHLWVVPP VFLALSKQSI
301: VKKFDLSSLK YIGSGAAPLG KDLMEECGRN IPNVLLMQGY GMTETCGIVS VEDPRLGKRN SGSAGMLAPG VEAQIVSVET GKSQPPNQQG EIWVRGPNMM
401: KGYLNNPQAT KETIDKKSWV HTGDLGYFNE DGNLYVVDRI KELIKYKGFQ VAPAELEGLL VSHPDILDAV VIPFPDEEAG EVPIAFVVRS PNSSITEQDI
501: QKFIAKQVAP YKRLRRVSFI SLVPKSAAGK ILRRELVQQV RSKM

Arabidopsis Description

4CLL74-coumarate--CoA ligase-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0X9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.