Factsheet for VIT_16s0039g02040.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77759	Soybean	peroxisome	79.01	78.02
KRH27719	Soybean	peroxisome	71.9	73.1
PGSC0003DMT400008182	Potato	peroxisome	75.55	72.76
Solyc03g097030.2.1	Tomato	peroxisome	75.55	72.63
GSMUA_Achr11P...	Banana	peroxisome, plastid	69.34	71.29
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	69.16	70.45
EES05680	Sorghum	peroxisome	72.26	69.96
AT1G65060.1	Thale cress	peroxisome	71.35	69.7
Bra004109.1-P	Field mustard	peroxisome	70.26	69.24
CDY07442	Canola	peroxisome	70.26	69.24
TraesCS6D01G248000.1	Wheat	peroxisome, plasma membrane	71.35	68.84
CDY39293	Canola	peroxisome	69.71	68.58
Os02t0697400-01	Rice	plasma membrane	71.17	68.54
TraesCS6B01G294100.1	Wheat	peroxisome	71.35	68.24
TraesCS6A01G266700.1	Wheat	peroxisome	71.17	68.06
HORVU0Hr1G018190.2	Barley	peroxisome	69.71	67.14
KRH29003	Soybean	plastid	67.7	65.78
VIT_11s0052g01090.t01	Wine grape	peroxisome	64.42	64.42
VIT_11s0052g01110.t01	Wine grape	peroxisome	62.59	63.64
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	67.34	58.2
VIT_06s0061g00450.t01	Wine grape	peroxisome	41.42	41.73
VIT_08s0007g05050.t01	Wine grape	plastid	37.96	39.25
VIT_13s0019g05260.t01	Wine grape	peroxisome	35.77	37.98
VIT_01s0010g03720.t01	Wine grape	peroxisome	37.41	36.94
VIT_14s0171g00290.t01	Wine grape	peroxisome	36.31	36.78
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	36.68	36.55
VIT_18s0001g00290.t01	Wine grape	peroxisome	36.13	36.07
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	35.77	35.7
VIT_14s0171g00300.t01	Wine grape	peroxisome	34.49	34.81
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	35.04	33.63
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	31.93	31.82

Protein Annotations

EntrezGene:100245991	wikigene:100245991	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EntrezGene:4CL	wikigene:4CL
MapMan:7.8.1.1	MapMan:9.2.1.3	ProteinID:AEX32786	ProteinID:AEX32786.1	EMBL:AM439400	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CAN73910	ProteinID:CAN73910.1	ProteinID:CCB50604	ProteinID:CCB50604.1
UniProt:F6HEF8	EMBL:FN595750	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016874	EMBL:JN858959	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096
PANTHER:PTHR24096:SF169	SUPFAM:SSF56801	TIGR:TC66743	UniParc:UPI0002109084	ArrayExpress:VIT_16s0039g02040	EnsemblPlantsGene:VIT_16s0039g02040
EnsemblPlants:VIT_16s0039g02040.t01	unigene:Vvi.5821	RefSeq:XP_002274994	RefSeq:XP_002274994.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:2123343..2128333

Molecular Weight (calculated)

59493.8 Da

IEP (calculated)

5.775

GRAVY (calculated)

0.079

Length

548 amino acids

Sequence
(BLAST)

001: MANRIDDHVF RSKLPEIPIS NHLPLHTYCF ENYSQFADRP CLIVGSTNKT YSFAETHLIS RKVGAGFAHL GLKQGDVVMI LLQNCAEFAF SFLGASMVGA
101: VTTTANPFYT SAEIFKQLNA SKAKIVVTQA QYVDKLRDYP DGQVAKIGEG FTVITIDDPP ENCMHFSVVS EANESELPEV SINSDDPVAL PFSSGTTGLP
201: KGVVLTHKSL ITSVAQQVDG ENPNLHLTPD DVVLCVLPLF HIYSLNSVLL CSLRAGAAVL LMQKFEIGTL LELIQRYRVS VAAVVPPLVL ALAKNPMVES
301: FDLSSIRVVL SGAAPLGKEL EAALRSRVPQ AVLGQGYGMT EAGPVLSMCL AFAKQPFPTK SGSCGTVVRN AELKVVDPET GCSLGRNQPG EICIRGQQIM
401: KGYLNDPEAT ASTIDVDGWL HTGDIGYVDD DEEVFIVDRV KELIKFKGFQ VPPAELEALL VSHPSIADAA VVPQKDDVAG EVPVAFVVRS NGFELTEEAV
501: KEFISKQVVF YKRLHKVYFV HAIPKSPSGK ILRKDLRAKL AEKTPEPN

Best Arabidopsis Sequence Match ( AT1G65060.1 )
(BLAST)

001: MITAALHEPQ IHKPTDTSVV SDDVLPHSPP TPRIFRSKLP DIDIPNHLPL HTYCFEKLSS VSDKPCLIVG STGKSYTYGE THLICRRVAS GLYKLGIRKG
101: DVIMILLQNS AEFVFSFMGA SMIGAVSTTA NPFYTSQELY KQLKSSGAKL IITHSQYVDK LKNLGENLTL ITTDEPTPEN CLPFSTLITD DETNPFQETV
201: DIGGDDAAAL PFSSGTTGLP KGVVLTHKSL ITSVAQQVDG DNPNLYLKSN DVILCVLPLF HIYSLNSVLL NSLRSGATVL LMHKFEIGAL LDLIQRHRVT
301: IAALVPPLVI ALAKNPTVNS YDLSSVRFVL SGAAPLGKEL QDSLRRRLPQ AILGQGYGMT EAGPVLSMSL GFAKEPIPTK SGSCGTVVRN AELKVVHLET
401: RLSLGYNQPG EICIRGQQIM KEYLNDPEAT SATIDEEGWL HTGDIGYVDE DDEIFIVDRL KEVIKFKGFQ VPPAELESLL INHHSIADAA VVPQNDEVAG
501: EVPVAFVVRS NGNDITEEDV KEYVAKQVVF YKRLHKVFFV ASIPKSPSGK ILRKDLKAKL C

Arabidopsis Description

4CL34-coumarate--CoA ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S777]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.