Factsheet for VIT_17s0000g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

cytosol 1
plastid 3
vacuole 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45731	Canola	peroxisome	20.0	71.43
KRH63739	Soybean	peroxisome, plastid	71.27	67.59
KRH54211	Soybean	peroxisome	71.45	65.83
CDY45730	Canola	vacuole	53.64	64.27
CDY71478	Canola	vacuole	53.45	64.05
Solyc03g111170.2.1	Tomato	nucleus	63.82	63.59
PGSC0003DMT400039281	Potato	peroxisome	63.64	63.41
Bra029229.1-P	Field mustard	peroxisome	60.91	59.93
AT5G63380.1	Thale cress	peroxisome	60.55	59.25
VIT_14s0171g00300.t01	Wine grape	peroxisome	58.18	58.93
GSMUA_Achr5P25570_001	Banana	peroxisome	59.09	58.88
EES01913	Sorghum	peroxisome, plastid	57.09	56.58
TraesCS3A01G394300.1	Wheat	peroxisome	57.45	56.43
TraesCS3B01G426300.1	Wheat	peroxisome	57.45	56.23
TraesCS3D01G388100.1	Wheat	peroxisome	57.27	56.05
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	54.55	54.55
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	54.91	54.12
VIT_14s0171g00290.t01	Wine grape	peroxisome	53.09	53.97
HORVU3Hr1G089000.2	Barley	peroxisome, plastid	57.45	53.92
GSMUA_Achr1P13470_001	Banana	peroxisome	49.64	52.91
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	53.45	52.5
TraesCS4D01G074700.1	Wheat	peroxisome	50.55	50.92
HORVU4Hr1G012660.1	Barley	peroxisome	50.0	50.83
Os01t0901600-01	Rice	peroxisome, plastid	55.09	50.67
TraesCS4B01G076100.1	Wheat	peroxisome	49.82	50.46
TraesCS4A01G239000.1	Wheat	peroxisome	50.55	50.45
TraesCS4D01G074600.1	Wheat	peroxisome	50.55	50.45
HORVU4Hr1G012680.8	Barley	peroxisome	50.73	50.09
TraesCS3B01G515400.1	Wheat	peroxisome	49.64	49.64
TraesCS4B01G076000.1	Wheat	peroxisome	49.64	49.55
Os07t0280200-01	Rice	peroxisome	50.0	49.28
TraesCS3A01G472200.1	Wheat	peroxisome	49.27	49.27
EER98656	Sorghum	peroxisome, plastid	49.64	49.19
TraesCS5B01G570100.1	Wheat	peroxisome	49.45	49.1
Os01t0901500-01	Rice	plastid	39.27	48.87
TraesCS5D01G561500.1	Wheat	peroxisome	49.27	48.83
TraesCS4B01G075900.1	Wheat	plastid	47.82	48.43
TraesCS3D01G468000.1	Wheat	peroxisome	48.73	48.38
Zm00001d019957_P002	Maize	peroxisome	50.0	48.33
TraesCS4A01G239100.2	Wheat	plastid	47.27	47.88
TraesCS4D01G074500.1	Wheat	plastid	47.27	47.88
Zm00001d012144_P001	Maize	plastid	35.64	47.8
TraesCS3D01G388000.2	Wheat	peroxisome, plastid	51.45	47.48
HORVU3Hr1G100420.4	Barley	peroxisome, plastid	49.82	47.24
EER97853	Sorghum	peroxisome, plastid	47.45	47.2
VIT_18s0001g00290.t01	Wine grape	peroxisome	46.73	46.81
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	45.82	45.9
KXG38162	Sorghum	peroxisome	46.55	45.47
HORVU4Hr1G012630.3	Barley	peroxisome	47.45	45.47
Zm00001d018660_P001	Maize	peroxisome	46.18	45.12
VIT_13s0019g05260.t01	Wine grape	peroxisome	41.27	43.99
OQU88316	Sorghum	peroxisome, plastid	46.91	43.14
VIT_06s0061g00450.t01	Wine grape	peroxisome	40.55	40.99
TraesCS4A01G238800.1	Wheat	plastid	31.82	40.51
VIT_08s0007g05050.t01	Wine grape	plastid	38.0	39.43
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	40.36	38.88
VIT_16s0039g02040.t01	Wine grape	peroxisome	36.55	36.68
VIT_11s0052g01090.t01	Wine grape	peroxisome	35.09	35.22
VIT_11s0052g01110.t01	Wine grape	peroxisome	34.18	34.88
VIT_01s0010g03720.t01	Wine grape	peroxisome	32.36	32.07

Protein Annotations

EntrezGene:100268159	wikigene:100268159	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	EMBL:AM426637
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CAN75661	ProteinID:CAN75661.1	ProteinID:CCB43315
ProteinID:CCB43315.1	UniProt:F6GST0	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004321
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009695	GO:GO:0009987	GO:GO:0016740	EntrezGene:LOC100268159
wikigene:LOC100268159	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF251
SUPFAM:SSF56801	UniParc:UPI00019850ED	ArrayExpress:VIT_17s0000g01790	EnsemblPlantsGene:VIT_17s0000g01790	EnsemblPlants:VIT_17s0000g01790.t01	unigene:Vvi.22765
RefSeq:XP_002279522	RefSeq:XP_002279522.2	RefSeq:XP_010663724.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:1326644..1332527

Molecular Weight (calculated)

60266.9 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.089

Length

550 amino acids

Sequence
(BLAST)

001: MAEMNGNHWI DPKSGFSPTT KTYHSLRPPV PFPPKHRPLS LAEYVISLLR SAPDSPLETT NVLIDASSDY RLSYSQFLRQ VQSLAASLQR ITGLSKGDTA
101: FILCPPSLKI PVIYFSLLSL GVTISPTNPL GSDSEVSHQI HLCKPAIAFA SSKTAHKLPS LRLGTVLVDS LEFDSMMTEN GAGYGKRVEV SQSDPAAILY
201: SSGTTGRVKG VLLTHRNLIT LIAGFHHNRL EKEEDGPRPV SLFTLPLFHV FGFFMLVRAV SLAETLVLME RFDFENMLKA VEKYRITYMP VSPPLVVALA
301: KSEFVGKYDL SSLQLLGSGG APLGKEVSER FSARFPNVQM VQGYGLTESG GGAAGMADLD EAKRHGSVGR LMHDMEAKIV DPKTGEALPP GQQGELWLRG
401: PTIMKGYVGD DEATAATLDQ EGWLKTGDLC YFDSDGFLFI VDRLKELIKY KAYQVPPAEL EHLLQSNPEI ADAAVIPYPD EEAGQIPMAF VVRKPGSSIT
501: EAQVMEFIAK QVAPYKKIRR VAFVNSIPKS PAGKILRREL VNHALSKPRL

Best Arabidopsis Sequence Match ( AT5G63380.1 )
(BLAST)

001: MLTKTNDSRL IDRSSGFDQR TGIYHSLRPS LSLPPIDQPL SAAEFALSLL LKSSPPATAG KNIEALTYLV NSSSGDNLTY GELLRRVRSL AVSLRERFPS
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL

Arabidopsis Description

4CLL94-coumarate--CoA ligase-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q84P23]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.