Factsheet for TraesCS4B01G075900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G074500.1	Wheat	plastid	94.48	94.48
TraesCS4A01G239100.2	Wheat	plastid	92.82	92.82
HORVU4Hr1G012630.3	Barley	peroxisome	94.29	89.2
EER97853	Sorghum	peroxisome, plastid	68.88	67.63
Zm00001d018660_P001	Maize	peroxisome	68.69	66.25
OQU88316	Sorghum	peroxisome, plastid	69.43	63.04
CDY45731	Canola	peroxisome	15.47	54.55
TraesCS4B01G076000.1	Wheat	peroxisome	50.09	49.36
TraesCS4B01G076100.1	Wheat	peroxisome	49.17	49.17
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	49.72	49.09
TraesCS3B01G426300.1	Wheat	peroxisome	50.64	48.93
VIT_14s0171g00300.t01	Wine grape	peroxisome	48.43	48.43
TraesCS3B01G515400.1	Wheat	peroxisome	48.99	48.36
CDY45730	Canola	vacuole	40.7	48.15
CDY71478	Canola	vacuole	40.52	47.93
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	48.43	47.82
TraesCS5B01G570100.1	Wheat	peroxisome	48.62	47.65
KRG94318	Soybean	peroxisome, plastid	46.78	46.95
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	48.25	46.79
Solyc03g111170.2.1	Tomato	nucleus	46.78	46.01
PGSC0003DMT400039281	Potato	peroxisome	46.59	45.83
KRH63739	Soybean	peroxisome, plastid	48.8	45.69
VIT_14s0171g00290.t01	Wine grape	peroxisome	45.12	45.29
Bra029229.1-P	Field mustard	peroxisome	46.59	45.26
KRH57646	Soybean	peroxisome, plastid	45.86	45.11
KRH54211	Soybean	peroxisome	48.62	44.22
AT5G63380.1	Thale cress	peroxisome	44.75	43.24
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	43.65	42.93
TraesCS1B01G211300.1	Wheat	peroxisome	38.49	35.6
TraesCS2B01G171200.1	Wheat	peroxisome	35.17	35.37
TraesCS4B01G269200.1	Wheat	peroxisome	36.1	35.32
TraesCS6B01G179900.2	Wheat	peroxisome	34.99	34.67
KRH57649	Soybean	plastid	17.86	34.64
KRG94321	Soybean	cytosol, golgi, peroxisome	19.52	33.65
TraesCS6B01G294100.1	Wheat	peroxisome	35.36	33.51
TraesCS2B01G291100.1	Wheat	plastid	34.25	30.05

Protein Annotations

EnsemblPlants:TraesCS4B01G075900.1	EnsemblPlantsGene:TraesCS4B01G075900	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF298	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:72167429..72170100

Molecular Weight (calculated)

57574.2 Da

IEP (calculated)

8.173

GRAVY (calculated)

0.308

Length

543 amino acids

Sequence
(BLAST)

001: MPSTAAVDPL SGYCAVTRTF HSLRAPIPLP PPSLPLSFPA FAFSLLPSPL PSHAAFLDAA TGEAVPFPAF LGQVRALATA LRAHLHISRG DVAFILAPPS
101: LHIPVLYFAL MAVGAVISPA NPALTTGELA HLAALSKPSV AFAVSSAASK LPPGLSAVLL DSPRFSSFLH GPGDALVMDA PVIYQSDPAA ILYSSGTTGS
201: AKAVVLTHRN LMTTRVLPGP APPDEVLMLT VPIFHVYGFV LCLRPVMAAQ TLVLHTARRF DTRVVLAAVG RFRVTRLALA PPALLAIVRT AEDDKSVTAS
301: AATLQVVLCG GASLSPELIR RFSHKFPHVF VSQGYGLTET TAGFCRSIGV EESRRVGSVG RLSQGAEAKI IDPGTGDALP PGVPGELWVR GPFVMEGYLG
401: DKESTSEILD SEGWLRTGDV CLIDKEGFLF VVDRLKEIIK CNGYQVAPAE LEDLLQTHPG IDEAAVVGYP DDQAGELPVA FVVGRSGSKV HEAQIKDFVA
501: KQVVHYKRIH RVFLVDSIPK NAAGKILRKD LAKLALHQIN AKL

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.