Factsheet for TraesCS1B01G211300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G200200.1	Wheat	peroxisome	92.5	95.6
TraesCS1A01G196700.1	Wheat	peroxisome	91.31	94.37
HORVU1Hr1G051190.2	Barley	peroxisome	91.14	84.12
Os10t0578950-00	Rice	peroxisome	72.23	75.99
KXG38810	Sorghum	peroxisome	71.72	73.47
Os08t0143300-00	Rice	peroxisome, plastid	68.99	68.53
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	37.99	65.59
Zm00001d030132_P002	Maize	peroxisome	70.19	64.78
GSMUA_Achr11P...	Banana	peroxisome	52.13	56.25
KRH74284	Soybean	peroxisome	52.98	56.24
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	50.94	52.36
AT4G19010.1	Thale cress	peroxisome, plastid	50.09	51.94
Bra013369.1-P	Field mustard	peroxisome, plastid	50.6	51.83
PGSC0003DMT400024014	Potato	peroxisome	49.23	50.35
Solyc08g076300.2.1	Tomato	peroxisome	49.23	50.35
KRH39635	Soybean	cytosol, golgi, peroxisome	41.4	48.8
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	41.91	44.57
TraesCS4B01G269200.1	Wheat	peroxisome	39.52	41.8
TraesCS3B01G426300.1	Wheat	peroxisome	39.01	40.75
CDX99401	Canola	peroxisome	46.0	40.42
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	36.97	38.75
TraesCS4B01G075900.1	Wheat	plastid	35.6	38.49
TraesCS4B01G076100.1	Wheat	peroxisome	35.43	38.31
TraesCS4B01G076000.1	Wheat	peroxisome	35.26	37.57
TraesCS5B01G570100.1	Wheat	peroxisome	35.43	37.55
TraesCS3B01G515400.1	Wheat	peroxisome	35.09	37.45
TraesCS2B01G171200.1	Wheat	peroxisome	33.73	36.67
TraesCS6B01G179900.2	Wheat	peroxisome	33.05	35.4
TraesCS6B01G294100.1	Wheat	peroxisome	31.86	32.64
TraesCS2B01G291100.1	Wheat	plastid	32.54	30.86

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006744	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016405	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF261
SUPFAM:SSF56801	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G211300	EnsemblPlants:TraesCS1B01G211300.1	TIGR:cd05904	SEG:seg

Description

No Description!

Coordinates

chr1B:-:384335930..384340049

Molecular Weight (calculated)

62545.4 Da

IEP (calculated)

8.829

GRAVY (calculated)

0.119

Length

587 amino acids

Sequence
(BLAST)

001: MDLNFSSTAR SAALAAAAAA MQDAAHDPSA ATFYSTAAGL YASTHPPVPL PSDPGLSLVP HIFSRLPLGP PPHSPPCLLD AATAASLSRA DLRRLVSSLA
101: HGLRRAHNIR AGAVVLLVLP NSVAFPVAFL AVLAVGGVAT TMNPSSSRAE IADRLRDTAP SLVLTSPENA EKLPRSAAPV VLVPETFHRT PSAGHEFAPF
201: RALLDSDADD FPSAEVGQED AAAVLYSSGT SGRSKGVVLT HRNLIAMVEL FVRFEASQYA RPACDNVYLA ALPMFHVYGL SLFAAGLLSL GSTVVIMRRF
301: DVGEAVRAIH RYKVTHLPLV PPIMAALLRA KSTGASSLDS LVQVSSGAAP LSGKLVQDFI KAFPHVDFIQ GYGMTESTAV GTRGFNTSKH KKYASVGLLA
401: PNMHAKIVDL ETGLCLPPGS CGELWLHGPA IMKGYLNDEM SCTRTDGWLQ TGDLAYFDSD GYLYIVGRLK DTIKYKGFQI APADLEAVLV QHPEIVDVAV
501: TSAEDEEAGE IPVAFVVRRS GSRLTRVQVM EYVAKQVSPY KKVRKVIFVE AIPKSAAGKV LRRLLKDSLR LDAAASRSDH TKPSSRL

Best Arabidopsis Sequence Match ( AT4G19010.1 )
(BLAST)

001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL

Arabidopsis Description

4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.