CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 3
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030132_P002	Maize	peroxisome	92.32	83.18
TraesCS1D01G200200.1	Wheat	peroxisome	74.17	74.82
TraesCS1A01G196700.1	Wheat	peroxisome	73.3	73.94
Os10t0578950-00	Rice	peroxisome	70.16	72.04
TraesCS1B01G211300.1	Wheat	peroxisome	73.47	71.72
Os08t0143300-00	Rice	peroxisome, plastid	70.33	68.19
HORVU1Hr1G051190.2	Barley	peroxisome	74.0	66.67
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	38.92	65.59
GSMUA_Achr11P...	Banana	peroxisome	53.05	55.88
KRH74284	Soybean	peroxisome	53.05	54.97
AT4G19010.1	Thale cress	peroxisome, plastid	52.01	52.65
Bra013369.1-P	Field mustard	peroxisome, plastid	52.53	52.53
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	50.44	50.61
Solyc08g076300.2.1	Tomato	peroxisome	50.26	50.17
PGSC0003DMT400024014	Potato	peroxisome	50.09	50.0
KRH39635	Soybean	cytosol, golgi, peroxisome	42.06	48.39
EER95569	Sorghum	peroxisome	40.66	42.13
CDX99401	Canola	peroxisome	48.34	41.47
OQU91476	Sorghum	peroxisome	39.97	41.11
EER97853	Sorghum	peroxisome, plastid	38.74	40.14
KXG40154	Sorghum	peroxisome	38.57	39.96
EES01913	Sorghum	peroxisome, plastid	38.05	39.28
OQU88316	Sorghum	peroxisome, plastid	39.27	37.63
EER98656	Sorghum	peroxisome, plastid	36.3	37.48
KXG38162	Sorghum	peroxisome	36.3	36.94
EES15085	Sorghum	peroxisome	35.08	36.41
EES04623	Sorghum	peroxisome	34.38	35.5
EER90150	Sorghum	peroxisome	34.03	35.01
EES13602	Sorghum	peroxisome	34.38	34.5
EES05680	Sorghum	peroxisome	33.68	34.1
EER99996	Sorghum	plastid	33.86	32.07
KXG26308	Sorghum	peroxisome	21.47	22.57

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	UniProt:A0A1B6QLK8	InterPro:AMP-bd_C	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006744	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016405	EnsemblPlants:KXG38810	ProteinID:KXG38810	ProteinID:KXG38810.1
PFAM:PF00501	PFAM:PF13193	PANTHER:PTHR24096	PANTHER:PTHR24096:SF261	EnsemblPlantsGene:SORBI_3001G282800	SUPFAM:SSF56801
TMHMM:TMhelix	UniParc:UPI0003C6EC4A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55502950..55510126

Molecular Weight (calculated)

60499.3 Da

IEP (calculated)

8.639

GRAVY (calculated)

0.240

Length

573 amino acids

Sequence
(BLAST)

001: MQDAVAASGP ANAAATFYSA ATGVYASTHP PVALPSDPSL SLVPHIFARL PAARPDAPAL LDAATAEALS RADLRRLVSA LAAGLRRRGG LRGGDVVLLA
101: LPNSVAFPVA FLAVLAAGSV ATTMSPSSAP AEIAARVRDT SPALVFAAPD NVGKLPPLRV PVVLVPDAFH HLGDDGAPEF APFRELLLFD SEPLMAPPVG
201: QDDAAAILYS SGTGGRSKGV VLTHRNLIAT VELFVRFEAS QYAAPACDNV YLAALPMFHV YGLALFAVGL LSLGSTVVVM KRFDAGDAVK AIHRFKVTHF
301: PVVPPIMAAL VHATKPAAMP LESLVQVSTG AAPSSGRLID DFVKAFPHVD FIQGYGMTES AAVGTRGFNT KQKKYASVGL LAPNMHARIV HMETACCLPP
401: GSCGELWLHG PAIMKGYLNH QDSRAINDGW LRTGDIAYFD FDGYLYIVGR LKEVIKYKGF QIAPADLEAI LIEHPGIVDV AVTSTEDKEA GEIPVAFVVR
501: KSGSGLSCTQ VMDYVAKQVS PYKKVRKVVF VESIPKSPAG KVLRRLLKDS LAASAVAGPT SYSESNPMRH SRL

Best Arabidopsis Sequence Match ( AT4G19010.1 )
(BLAST)

001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL

Arabidopsis Description

4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.