Factsheet for TraesCS1A01G196700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G200200.1	Wheat	peroxisome	95.77	95.77
TraesCS1B01G211300.1	Wheat	peroxisome	94.37	91.31
HORVU1Hr1G051190.2	Barley	peroxisome	93.84	83.81
Os10t0578950-00	Rice	peroxisome	75.35	76.7
KXG38810	Sorghum	peroxisome	73.94	73.3
Os08t0143300-00	Rice	peroxisome, plastid	71.48	68.7
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	39.26	65.59
Zm00001d030132_P002	Maize	peroxisome	72.54	64.78
GSMUA_Achr11P...	Banana	peroxisome	53.35	55.7
KRH74284	Soybean	peroxisome	54.23	55.7
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	51.58	51.31
Bra013369.1-P	Field mustard	peroxisome, plastid	51.58	51.13
AT4G19010.1	Thale cress	peroxisome, plastid	50.7	50.88
PGSC0003DMT400024014	Potato	peroxisome	50.53	50.0
Solyc08g076300.2.1	Tomato	peroxisome	50.53	50.0
KRH39635	Soybean	cytosol, golgi, peroxisome	42.43	48.39
TraesCS5A01G498800.1	Wheat	peroxisome	43.13	44.38
TraesCS4A01G036200.1	Wheat	peroxisome	39.61	40.98
TraesCS3A01G394300.1	Wheat	peroxisome	40.14	40.71
CDX99401	Canola	peroxisome	47.54	40.42
TraesCS4A01G239100.2	Wheat	plastid	38.56	40.33
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	39.08	39.78
TraesCS4A01G239000.1	Wheat	peroxisome	37.32	38.48
TraesCS3A01G472200.1	Wheat	peroxisome	36.8	38.0
TraesCS2A01G145800.1	Wheat	peroxisome	34.68	36.35
TraesCS6A01G151700.1	Wheat	peroxisome	34.33	35.71
TraesCS7A01G496200.1	Wheat	peroxisome	34.68	35.37
TraesCS6A01G266700.1	Wheat	peroxisome	33.27	32.98
TraesCS4A01G238800.1	Wheat	plastid	24.65	32.41
TraesCS2A01G272900.1	Wheat	plastid	34.51	31.61

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006744	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016405	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF261
SUPFAM:SSF56801	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G196700	EnsemblPlants:TraesCS1A01G196700.1	TIGR:cd05904	SEG:seg

Description

No Description!

Coordinates

chr1A:-:354943779..354948342

Molecular Weight (calculated)

60242.6 Da

IEP (calculated)

7.945

GRAVY (calculated)

0.141

Length

568 amino acids

Sequence
(BLAST)

001: MQHAAQDPSA AAFYSAAAGL YASAHPPVPL PADPGLSLVP HIFSRLPLGP PPPHSPPCLL DAATAASLSR ADFRRLVSSL ARGLRGAHDI RAGAFVLLVL
101: PNSLAFPVAF LAVLGAGGVA TTMNPSSSRA EIADRLRDTA PSLVLASPDN AAKLPPSAAP VVLVPETFHP TPSAGHEFAP FRALLDSDAD DLPSAEVGQD
201: DAAAVLYSSG TSGRSKGVVL THRNLIAMVE LFVRFEASQY ARPACDNVYL AALPMFHVYG LSLFAAGLLS LGSTVVVMRR FDVGEAVRAV HRYKVTHLPL
301: VPPIMAALLR AKATGASSLD SLVQVSSGAA PLSGKLVQDF IKAFPHVDFI QGYGMTESTA VGTRGFNTSK HKKYASVGLL APNMHAKIVD LETGLCLPPG
401: SCGELWLHGP AIMKGYLNDE DTCTRNDGWL QTGDLAYFDS DGYLYIVGRL KDTIKYKGFQ IAPADLEAVL VQHPEIVDVA VTSAEDEEAG EIPVAFVVRR
501: SGSHLTCVQV MEYVAKQVSP YKKVRKVIFV EAIPKSAAGK VLRRLLKDSL RIDAAASRSD HTKPSARL

Best Arabidopsis Sequence Match ( AT4G19010.1 )
(BLAST)

001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL

Arabidopsis Description

4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.