Factsheet for TraesCS4A01G239100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G074500.1	Wheat	plastid	95.21	95.21
TraesCS4B01G075900.1	Wheat	plastid	92.82	92.82
HORVU4Hr1G012630.3	Barley	peroxisome	91.9	86.93
EER97853	Sorghum	peroxisome, plastid	69.8	68.54
Zm00001d018660_P001	Maize	peroxisome	69.43	66.96
OQU88316	Sorghum	peroxisome, plastid	70.35	63.88
CDY45731	Canola	peroxisome	15.84	55.84
TraesCS4A01G239000.1	Wheat	peroxisome	51.38	50.64
TraesCS3A01G472200.1	Wheat	peroxisome	51.01	50.36
TraesCS3A01G394300.1	Wheat	peroxisome	50.83	49.29
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	49.91	49.27
CDY45730	Canola	vacuole	41.07	48.58
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	49.72	48.39
CDY71478	Canola	vacuole	40.88	48.37
VIT_14s0171g00300.t01	Wine grape	peroxisome	48.07	48.07
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	47.88	47.27
Solyc03g111170.2.1	Tomato	nucleus	47.88	47.1
KRG94318	Soybean	peroxisome, plastid	46.78	46.95
PGSC0003DMT400039281	Potato	peroxisome	47.7	46.92
KRH57646	Soybean	peroxisome, plastid	46.78	46.01
Bra029229.1-P	Field mustard	peroxisome	46.78	45.44
KRH63739	Soybean	peroxisome, plastid	48.43	45.34
VIT_14s0171g00290.t01	Wine grape	peroxisome	44.75	44.92
TraesCS4A01G238800.1	Wheat	plastid	35.73	44.91
KRH54211	Soybean	peroxisome	48.8	44.39
AT5G63380.1	Thale cress	peroxisome	45.67	44.13
TraesCS5A01G498800.1	Wheat	peroxisome	44.38	43.66
TraesCS1A01G196700.1	Wheat	peroxisome	40.33	38.56
TraesCS4A01G036200.1	Wheat	peroxisome	35.91	35.52
TraesCS2A01G145800.1	Wheat	peroxisome	35.17	35.24
KRG94321	Soybean	cytosol, golgi, peroxisome	20.26	34.92
TraesCS7A01G496200.1	Wheat	peroxisome	35.17	34.29
KRH57649	Soybean	plastid	17.68	34.29
TraesCS6A01G151700.1	Wheat	peroxisome	34.25	34.07
TraesCS6A01G266700.1	Wheat	peroxisome	35.36	33.51
TraesCS2A01G272900.1	Wheat	plastid	35.17	30.81

Protein Annotations

EnsemblPlants:TraesCS4A01G239100.2	EnsemblPlantsGene:TraesCS4A01G239100	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF298	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:548341734..548344564

Molecular Weight (calculated)

57099.5 Da

IEP (calculated)

8.693

GRAVY (calculated)

0.309

Length

543 amino acids

Sequence
(BLAST)

001: MPSPAAVDPL SGYCAVTRTF HSLRAPIPLP PPSPPLSFPA FAFSLLPSPL PAHAAFLDAA TGEAVPFPAF LGQVRALATA LRAHLHISRG DVAFVLAPPS
101: LHIPVLYFAL MAVGAVVSPA NPALTAGELA HLAALSKPSV AFAVSSAAGK LPPGLSAVLL DSPRFSSFLH GPGDALVMDA AVMHQSDPAA ILYSSGTTGS
201: AKAVVLTHRN LMATRVLPGP APPGEVLMLT VPLFHVYGFV FCLRPVMAAQ TLVLHTAGRF DTRGVLAAVG RFRVTRLALA PPALLAIVRA AEDDESVAAS
301: AATLQVVLCG GASLSPELVR RFSHKFPHVF VSQGYGLTET TAGFCRSTGV EESRRIGSVG RLSPGAEAKI IDPATGHALP PGLPGELWVR GPFVMQGYLG
401: DKESTSGILD SEGWLRTGDV CVIDKDGFLS VVDRLKEIIK YKGYQVAPTE LEDLLQTHPG IDEAAVVGYA DDQAGELPVA FVVGRSGSNL HEAQIKDFVA
501: KQVVHYKRVH RVFLVDSIPK NAAGKILRKD LAKLALHRIN AKL

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.