Factsheet for TraesCS4A01G239000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G074600.1	Wheat	peroxisome	96.19	96.19
TraesCS4B01G076000.1	Wheat	peroxisome	94.92	94.92
HORVU4Hr1G012680.8	Barley	peroxisome	90.2	89.23
TraesCS3A01G472200.1	Wheat	peroxisome	86.93	87.09
TraesCS4A01G238800.1	Wheat	plastid	60.25	76.85
EER98656	Sorghum	peroxisome, plastid	72.78	72.25
Zm00001d019957_P002	Maize	peroxisome	74.05	71.7
Os07t0280200-01	Rice	peroxisome	72.41	71.51
CDY45731	Canola	peroxisome	17.6	62.99
GSMUA_Achr1P13470_001	Banana	peroxisome	54.27	57.95
TraesCS4A01G239100.2	Wheat	plastid	50.64	51.38
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	50.45	50.55
TraesCS3A01G394300.1	Wheat	peroxisome	51.0	50.18
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	50.09	49.46
PGSC0003DMT400039281	Potato	peroxisome	49.36	49.28
CDY71478	Canola	vacuole	41.02	49.24
CDY45730	Canola	vacuole	41.02	49.24
Solyc03g111170.2.1	Tomato	nucleus	48.64	48.55
KRH63739	Soybean	peroxisome, plastid	50.45	47.93
VIT_14s0171g00300.t01	Wine grape	peroxisome	47.01	47.7
Bra029229.1-P	Field mustard	peroxisome	47.55	46.87
VIT_14s0171g00290.t01	Wine grape	peroxisome	45.92	46.77
KRH54211	Soybean	peroxisome	50.09	46.23
AT5G63380.1	Thale cress	peroxisome	46.64	45.73
KRG94318	Soybean	peroxisome, plastid	44.46	45.29
KRH57646	Soybean	peroxisome, plastid	44.65	44.57
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	44.28	44.36
TraesCS5A01G498800.1	Wheat	peroxisome	41.38	41.3
TraesCS4A01G036200.1	Wheat	peroxisome	39.38	39.53
TraesCS1A01G196700.1	Wheat	peroxisome	38.48	37.32
KRH57649	Soybean	plastid	17.24	33.93
TraesCS2A01G272900.1	Wheat	plastid	36.3	32.26
KRG94321	Soybean	cytosol, golgi, peroxisome	18.33	32.06
TraesCS2A01G145800.1	Wheat	peroxisome	31.4	31.92
TraesCS6A01G151700.1	Wheat	peroxisome	31.58	31.87
TraesCS6A01G266700.1	Wheat	peroxisome	32.85	31.59
TraesCS7A01G496200.1	Wheat	peroxisome	31.58	31.24

Protein Annotations

EnsemblPlants:TraesCS4A01G239000.1	EnsemblPlantsGene:TraesCS4A01G239000	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF269	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
TIGR:cd05904	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:548274831..548282171

Molecular Weight (calculated)

58578.3 Da

IEP (calculated)

8.552

GRAVY (calculated)

0.151

Length

551 amino acids

Sequence
(BLAST)

001: MSSALAERSG AIDARTGYRA TTRSFVSLRP PLPLPPADAP LTFPAFALSL LPSPLPAHPA LLDAATGEAV SYPAFLSQVR ALVGALRSRA VPLGRGDVAF
101: VLAPARLDVP VLYFALLAVG VVVSPANPAL TAGEVARLVA LSGASVAFAV SSTAAKLPAG LPTILLDSPH FRSLLHSDQG ENDPAPLDTG AVCQSATATI
201: QYSSGTTGRV KAAALPHRSF IAQAAGFHAR HVRPRKVNER TLMGAPMFHS MGFFFALNGL AQGLTTVVMT DAATRAGLRG MLEAAQRWEV TEMTVAPPVV
301: LGMTKDRCRL TSLVRVVCGG APLPTSVAEQ FRRRFPHVDL CMGYGSTEAG GISLMIDRDE CSRVGSAGRI SHNVEVKIVD IVTGEPLPVG RKGELCVRGP
401: SIMTGYVGDD GANTAAFDSE GWLKTGDLCY IDEDGFLFVV DRLKELIKYK AYQVAPAELE LVLQSLPEIM DAAVMPYPHE EAGEIPMALV VRQPGSKVTE
501: AQVMEHVAKQ VAPYKKVRKV VFVDSIPKSP AGKILRRQLS DHMQPCHVSR L

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.