Factsheet for PGSC0003DMT400039281

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111170.2.1	Tomato	nucleus	96.01	96.01
CDY45731	Canola	peroxisome	19.75	70.78
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	63.41	63.64
CDY45730	Canola	vacuole	52.72	63.4
CDY71478	Canola	vacuole	52.54	63.18
KRH63739	Soybean	peroxisome, plastid	61.41	58.45
Bra029229.1-P	Field mustard	peroxisome	58.88	58.14
AT5G63380.1	Thale cress	peroxisome	58.88	57.83
GSMUA_Achr5P25570_001	Banana	peroxisome	56.52	56.52
KRH54211	Soybean	peroxisome	61.05	56.45
EES01913	Sorghum	peroxisome, plastid	53.99	53.69
TraesCS3D01G388100.1	Wheat	peroxisome	54.35	53.38
TraesCS3A01G394300.1	Wheat	peroxisome	53.99	53.21
TraesCS3B01G426300.1	Wheat	peroxisome	54.17	53.2
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	53.26	52.69
HORVU3Hr1G089000.2	Barley	peroxisome, plastid	54.35	51.19
GSMUA_Achr1P13470_001	Banana	peroxisome	47.64	50.97
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	51.63	50.89
TraesCS4D01G074700.1	Wheat	peroxisome	50.0	50.55
HORVU4Hr1G012660.1	Barley	peroxisome	49.46	50.46
TraesCS4B01G076100.1	Wheat	peroxisome	49.09	49.91
TraesCS4A01G239000.1	Wheat	peroxisome	49.28	49.36
TraesCS4B01G076000.1	Wheat	peroxisome	48.73	48.82
TraesCS3A01G472200.1	Wheat	peroxisome	48.55	48.73
TraesCS3B01G515400.1	Wheat	peroxisome	48.55	48.73
Os01t0901600-01	Rice	peroxisome, plastid	52.54	48.49
HORVU4Hr1G012680.8	Barley	peroxisome	48.91	48.47
TraesCS4D01G074600.1	Wheat	peroxisome	48.37	48.46
Os07t0280200-01	Rice	peroxisome	48.73	48.21
Zm00001d012144_P001	Maize	plastid	35.69	48.05
TraesCS3D01G468000.1	Wheat	peroxisome	48.01	47.83
TraesCS4A01G239100.2	Wheat	plastid	46.92	47.7
TraesCS5B01G570100.1	Wheat	peroxisome	47.83	47.65
TraesCS5D01G561500.1	Wheat	peroxisome	47.64	47.39
TraesCS4D01G074500.1	Wheat	plastid	46.56	47.33
Os01t0901500-01	Rice	plastid	37.86	47.29
EER98656	Sorghum	peroxisome, plastid	47.46	47.21
EER97853	Sorghum	peroxisome, plastid	47.28	47.2
HORVU3Hr1G100420.4	Barley	peroxisome, plastid	49.28	46.9
TraesCS4B01G075900.1	Wheat	plastid	45.83	46.59
Zm00001d018660_P001	Maize	peroxisome	47.28	46.36
TraesCS3D01G388000.2	Wheat	peroxisome, plastid	50.0	46.31
Zm00001d019957_P002	Maize	peroxisome	47.46	46.05
KXG38162	Sorghum	peroxisome	46.38	45.47
PGSC0003DMT400075394	Potato	peroxisome, plastid	45.11	45.19
HORVU4Hr1G012630.3	Barley	peroxisome	45.83	44.08
OQU88316	Sorghum	peroxisome, plastid	46.92	43.31
TraesCS4A01G238800.1	Wheat	plastid	33.33	42.59
PGSC0003DMT400020978	Potato	peroxisome	39.86	40.67
PGSC0003DMT400024014	Potato	peroxisome	38.95	37.46
PGSC0003DMT400074444	Potato	peroxisome	35.87	36.46
PGSC0003DMT400036886	Potato	peroxisome	35.87	36.33
PGSC0003DMT400037485	Potato	peroxisome	35.69	35.95
PGSC0003DMT400051216	Potato	peroxisome	35.14	33.98
PGSC0003DMT400008182	Potato	peroxisome	34.78	33.74

Protein Annotations

EntrezGene:102588483	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0004321	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009695	GO:GO:0009987	GO:GO:0016740	UniProt:M1B819	PFAM:PF00501	PFAM:PF13193
EnsemblPlantsGene:PGSC0003DMG400015190	PGSC:PGSC0003DMG400015190	EnsemblPlants:PGSC0003DMT400039281	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF251
SUPFAM:SSF56801	UniParc:UPI000295D381	RefSeq:XP_006351482.1	:	:	:

Description

AMP dependent CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400015190]

Coordinates

chr3:-:50785904..50791146

Molecular Weight (calculated)

59875.5 Da

IEP (calculated)

6.610

GRAVY (calculated)

0.059

Length

552 amino acids

Sequence
(BLAST)

001: MDPKNGYCPD TKIFKSLRPS VPLPPLTEPL SIVQYALSLL NSPTTGINLS ATTFLVDADT GHRLSYADFL SQTQNLASSI QARYPSLSQN DVAFVLSPTS
101: IHVPIVFFAL LSLGVVVSPA NPLSSSSELT HMVQLCKPLI AFATSSTVGK LPSSLFPLGT ILLDSPEFRK MIQIPVSNPI SYPLIHQSDS AAILYSSGTT
201: GKVKGVELTH RNLIALIASL FHSRFNDNAA DEGEITEQAV AFMTLPLFHV FGFFMLIRLA SMGETMVMTG RFDFEKMLAA VEKYRVTYMP VSPPLVVAMA
301: KSDLALKYDL SSLQLLACGG APLGKEVAER FKSRFPDVEI LQGYGLTETT GGATGMNGPE ESNQYGSAGR LGVNVEAKIV DPESGKSLPP GQRGELWLRA
401: PTIMKGYVGD KQATSATLDP EGWLKTGDLC YFDADGFLYV VDRLKELIKY KAYQVPPAEL EHLLQSIPDV ADAAVIPYPD EEAGEIPMAY IVRRPGSTIS
501: ESQIIDIIAK QVSPYKKIRR VAFINAIPKS PAGKILRREL VNHATNGASA RL

Best Arabidopsis Sequence Match ( AT5G63380.1 )
(BLAST)

001: MLTKTNDSRL IDRSSGFDQR TGIYHSLRPS LSLPPIDQPL SAAEFALSLL LKSSPPATAG KNIEALTYLV NSSSGDNLTY GELLRRVRSL AVSLRERFPS
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL

Arabidopsis Description

4CLL94-coumarate--CoA ligase-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q84P23]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.