Factsheet for PGSC0003DMT400074444

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
vacuole 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068650.2.1	Tomato	peroxisome	96.69	96.69
PGSC0003DMT400036886	Potato	peroxisome	87.85	87.52
PGSC0003DMT400037485	Potato	peroxisome	81.77	81.02
GSMUA_Achr9P22840_001	Banana	peroxisome	51.38	73.04
GSMUA_Achr4P12590_001	Banana	peroxisome	65.75	73.01
GSMUA_AchrUn_...	Banana	peroxisome	69.06	72.39
KRH09616	Soybean	mitochondrion, peroxisome	71.27	71.93
GSMUA_Achr4P05820_001	Banana	peroxisome	69.06	71.84
KRH23700	Soybean	peroxisome	72.19	71.66
GSMUA_Achr1P23450_001	Banana	peroxisome	68.51	71.54
PGSC0003DMT400051216	Potato	peroxisome	75.14	71.45
Bra030429.1-P	Field mustard	peroxisome	71.82	70.65
CDX87831	Canola	peroxisome	71.64	70.6
GSMUA_Achr7P05070_001	Banana	peroxisome	64.09	70.59
CDY43921	Canola	peroxisome	71.45	70.42
AT3G21240.1	Thale cress	peroxisome	72.01	70.32
AT1G51680.1	Thale cress	peroxisome	72.38	70.05
CDY19568	Canola	peroxisome	70.17	69.02
Bra031266.1-P	Field mustard	peroxisome	69.98	68.84
TraesCS6B01G179900.2	Wheat	peroxisome	66.48	65.88
TraesCS6D01G141700.1	Wheat	peroxisome	66.3	65.57
TraesCS6A01G151700.1	Wheat	peroxisome	65.93	65.57
EER90150	Sorghum	peroxisome	66.67	64.99
Os06t0656500-01	Rice	peroxisome	66.48	64.58
Os02t0177600-01	Rice	plasma membrane	65.75	64.44
Os08t0448000-01	Rice	peroxisome	63.9	64.38
HORVU6Hr1G030390.2	Barley	peroxisome	65.56	64.38
TraesCS7D01G483400.1	Wheat	peroxisome	65.56	63.57
TraesCS7A01G496200.1	Wheat	peroxisome	65.19	63.55
TraesCS2B01G171200.1	Wheat	peroxisome	63.17	63.52
TraesCS2D01G150400.1	Wheat	peroxisome	63.17	63.52
TraesCS2A01G145800.1	Wheat	peroxisome	63.17	63.28
EES04623	Sorghum	peroxisome	64.27	62.88
EES15085	Sorghum	peroxisome	62.98	61.96
Zm00001d032103_P001	Maize	peroxisome	62.8	61.44
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	65.93	60.68
PGSC0003DMT400008182	Potato	peroxisome	62.25	59.4
Zm00001d015459_P003	Maize	peroxisome	64.09	59.28
Os08t0245200-01	Rice	extracellular	61.14	58.87
Zm00001d050224_P002	Maize	peroxisome	58.56	56.79
EES13602	Sorghum	peroxisome	59.48	56.57
Zm00001d046915_P001	Maize	extracellular	66.11	56.18
CDY06435	Canola	vacuole	39.78	48.54
PGSC0003DMT400020978	Potato	peroxisome	41.62	41.77
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	40.15	39.93
PGSC0003DMT400075394	Potato	peroxisome, plastid	39.59	39.02
PGSC0003DMT400039281	Potato	peroxisome	36.46	35.87
PGSC0003DMT400024014	Potato	peroxisome	35.73	33.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400074444	EnsemblPlantsGene:PGSC0003DMG400028929	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF207	PFAM:PF00501	PFAM:PF13193	PGSC:PGSC0003DMG400028929	ScanProsite:PS00455	SUPFAM:SSF56801
UniParc:UPI00029632AA	UniProt:M1CTP3	MapMan:7.8.1.1	MapMan:9.2.1.3	:	:

Description

4-coumarate--CoA ligase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400028929]

Coordinates

chr6:-:50341582..50345664

Molecular Weight (calculated)

59542.1 Da

IEP (calculated)

5.372

GRAVY (calculated)

0.001

Length

543 amino acids

Sequence
(BLAST)

001: MENETKQGDI IFRSKLPDIY IPNHLPLHSY CFENISEFKS RPCLIDGANN QIYTYADVEL NSRKVAAGLH KQFGIQQKDT IMILLPNSPE FVYAFLGASY
101: LGAISTMANP LFTSAEVVKQ AKASNAKIIV TQACHVNKVK DYALENDVKI VCIDSAPEGC VHFSELIQAD EHEIPQVEIQ PDDVVALPYS SGTTGLPKGV
201: MLTHKGLVTS VAQQVDGENP NLYIHSEDVL LCVLPLFHIY SLNSILLCGL RVGAAILIMQ KFDIVPFLEL IQNYKVTIGP FVPPIVLAIA KSPMVDNYDL
301: SSVRTVMSGA APLGKELEDT VRAKIPNAKL GQGYGMTEAG PVLAMCLAFA KEPFEIKSGA CGTVVRNAEM KIVDPDTGKS LPRNQSGEIC IRGDQIMKGY
401: LNDPDATTGT IDKEGWLHTG DIGYIDNDDE LFIVDRLKEL IKYKGFQVAP AELEALLLNH PNISDAAVVP MKDEQAGEVP VAFVVRSNGS TITEDEVKEF
501: ITKQVIFYKR IKRVFFVDAV PKSPSGKILR KDLRAKLAAG FPN

Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)

001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN

Arabidopsis Description

4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.