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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 1
  • peroxisome 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030429.1-P Field mustard peroxisome 91.09 92.57
CDX87831 Canola peroxisome 90.91 92.56
CDY43921 Canola peroxisome 90.73 92.38
AT3G21240.1 Thale cress peroxisome 82.0 82.73
PGSC0003DMT400074444 Potato peroxisome 70.05 72.38
Solyc06g068650.2.1 Tomato peroxisome 69.16 71.45
PGSC0003DMT400036886 Potato peroxisome 68.81 70.83
GSMUA_Achr9P22840_001 Banana peroxisome 48.13 70.68
Solyc03g117870.2.1 Tomato plastid 68.63 70.64
GSMUA_Achr4P12590_001 Banana peroxisome 61.32 70.35
KRH09616 Soybean mitochondrion, peroxisome 67.2 70.07
KRH23700 Soybean peroxisome 68.27 70.02
GSMUA_Achr1P23450_001 Banana peroxisome 64.53 69.62
GSMUA_Achr4P05820_001 Banana peroxisome 64.35 69.16
GSMUA_AchrUn_... Banana peroxisome 63.81 69.11
GSMUA_Achr7P05070_001 Banana peroxisome 60.25 68.56
PGSC0003DMT400037485 Potato peroxisome 65.95 67.52
Solyc12g042460.1.1 Tomato peroxisome 65.24 66.79
EER90150 Sorghum peroxisome 64.17 64.63
TraesCS2D01G150400.1 Wheat peroxisome 62.03 64.44
TraesCS2B01G171200.1 Wheat peroxisome 61.85 64.26
AT3G21230.1 Thale cress peroxisome 65.24 64.21
TraesCS6B01G179900.2 Wheat peroxisome 62.39 63.87
TraesCS2A01G145800.1 Wheat peroxisome 61.68 63.84
TraesCS6A01G151700.1 Wheat peroxisome 62.03 63.74
TraesCS6D01G141700.1 Wheat peroxisome 62.21 63.57
HORVU6Hr1G030390.2 Barley peroxisome 62.03 62.93
Os08t0448000-01 Rice peroxisome 60.07 62.52
TraesCS7A01G496200.1 Wheat peroxisome 62.03 62.48
TraesCS7D01G483400.1 Wheat peroxisome 62.21 62.32
EES15085 Sorghum peroxisome 61.32 62.32
Os02t0177600-01 Rice plasma membrane 61.5 62.27
Os06t0656500-01 Rice peroxisome 62.03 62.25
EES04623 Sorghum peroxisome 61.14 61.8
Zm00001d032103_P001 Maize peroxisome 60.25 60.9
Os08t0245200-01 Rice extracellular 60.78 60.46
AT1G65060.1 Thale cress peroxisome 60.07 60.07
EES13602 Sorghum peroxisome 60.43 59.37
HORVU7Hr1G111130.3 Barley peroxisome, plastid 62.39 59.32
Zm00001d050224_P002 Maize peroxisome 58.65 58.75
Zm00001d015459_P003 Maize peroxisome 60.61 57.92
Zm00001d046915_P001 Maize extracellular 63.99 56.18
AT4G05160.1 Thale cress peroxisome 39.93 41.18
HORVU0Hr1G002720.3 Barley mitochondrion, plastid 39.57 40.66
AT1G20510.1 Thale cress plastid 36.9 37.91
AT1G62940.1 Thale cress peroxisome 36.01 37.27
AT1G20480.1 Thale cress peroxisome 36.36 36.11
AT1G20500.1 Thale cress plastid 35.12 35.82
AT5G38120.1 Thale cress plastid 34.94 35.64
AT4G19010.1 Thale cress peroxisome, plastid 35.29 34.98
AT5G63380.1 Thale cress peroxisome 33.33 33.27
AT1G20490.2 Thale cress peroxisome 23.71 29.75
Protein Annotations
Gene3D:3.30.300.30Gene3D:3.40.50.12780PDB:3TSYSymbol:4CL1MapMan:7.8.1.1EntrezGene:841593
MapMan:9.2.1.3UniProt:A0A178W9C1UniProt:A0A1P8SNN0ProteinID:AAD47191.1ProteinID:AAG50881.1ProteinID:AEE32698.1
ProteinID:AEE32699.1InterPro:AMP-bd_CInterPro:AMP-binding_CSInterPro:AMP-dep_Synth/LigArrayExpress:AT1G51680EnsemblPlantsGene:AT1G51680
RefSeq:AT1G51680TAIR:AT1G51680RefSeq:AT1G51680-TAIR-GEnsemblPlants:AT1G51680.1TAIR:AT1G51680.1EMBL:AY075622
EMBL:AY099747EMBL:AY133582EMBL:AY376729Unigene:At.21694GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009698GO:GO:0009987GO:GO:0016207
GO:GO:0016874GO:GO:0019748EMBL:KX817185RefSeq:NP_175579.1RefSeq:NP_849793.1ProteinID:OAP14948.1
PFAM:PF00501PFAM:PF13193PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009001PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00455PANTHER:PTHR24096PANTHER:PTHR24096:SF207
UniProt:Q42524SUPFAM:SSF56801EMBL:U18675UniParc:UPI00000011ABSEG:seg:
Description
4CL14-coumarate-CoA ligase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1P8SNN0]
Coordinates
chr1:-:19158746..19161737
Molecular Weight (calculated)
61056.7 Da
IEP (calculated)
5.081
GRAVY (calculated)
0.018
Length
561 amino acids
Sequence
(BLAST)
001: MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC
101: PEFVLSFLAA SFRGATATAA NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF TELTQSTTEA SEVIDSVEIS
201: PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP
301: MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS
401: LSRNQPGEIC IRGHQIMKGY LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH PDITDVAVVA MKEEAAGEVP
501: VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI PKAPSGKILR KDLRAKLANG L
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.