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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • peroxisome 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES04623 Sorghum peroxisome 88.81 88.65
TraesCS6A01G151700.1 Wheat peroxisome 86.64 87.91
TraesCS6D01G141700.1 Wheat peroxisome 86.46 87.25
TraesCS6B01G179900.2 Wheat peroxisome 86.28 87.23
HORVU6Hr1G030390.2 Barley peroxisome 86.28 86.44
Os06t0656500-01 Rice peroxisome 85.02 84.26
Zm00001d015459_P003 Maize peroxisome 87.91 82.96
GSMUA_AchrUn_... Banana peroxisome 68.59 73.36
GSMUA_Achr9P22840_001 Banana peroxisome 50.54 73.3
GSMUA_Achr4P12590_001 Banana peroxisome 64.62 73.21
GSMUA_Achr1P23450_001 Banana peroxisome 68.41 72.88
GSMUA_Achr7P05070_001 Banana peroxisome 64.62 72.62
GSMUA_Achr4P05820_001 Banana peroxisome 67.69 71.84
CDY53918 Canola peroxisome 23.83 70.59
CDY32418 Canola peroxisome 22.92 69.4
Solyc06g068650.2.1 Tomato peroxisome 64.62 65.93
VIT_11s0052g01090.t01 Wine grape peroxisome 65.16 65.88
PGSC0003DMT400074444 Potato peroxisome 64.44 65.75
Os08t0448000-01 Rice peroxisome 63.9 65.68
PGSC0003DMT400036886 Potato peroxisome 64.26 65.32
VIT_11s0052g01110.t01 Wine grape peroxisome 63.36 65.12
Solyc03g117870.2.1 Tomato plastid 63.9 64.95
Os08t0245200-01 Rice extracellular 65.52 64.36
KRH02885 Soybean peroxisome 61.91 63.99
KRH02884 Soybean peroxisome 62.82 63.62
KRH09616 Soybean mitochondrion, peroxisome 61.73 63.57
Bra031266.1-P Field mustard peroxisome 63.0 63.22
KRH23700 Soybean peroxisome 62.09 62.89
CDY19568 Canola peroxisome 62.64 62.86
AT3G21240.1 Thale cress peroxisome 62.64 62.41
CDY43921 Canola peroxisome 61.91 62.25
CDX87831 Canola peroxisome 61.73 62.07
Bra030429.1-P Field mustard peroxisome 61.55 61.78
AT1G51680.1 Thale cress peroxisome 62.27 61.5
Solyc12g042460.1.1 Tomato peroxisome 60.29 60.95
PGSC0003DMT400051216 Potato peroxisome 62.82 60.95
Solyc07g008360.1.1 Tomato peroxisome 62.09 60.56
PGSC0003DMT400037485 Potato peroxisome 59.75 60.4
Os02t0697400-01 Rice plasma membrane 60.47 58.88
KRH02886 Soybean peroxisome, plastid 57.76 56.74
CDY48875 Canola mitochondrion, plastid, vacuole 45.31 56.53
CDY19570 Canola peroxisome 55.78 55.28
CDY06431 Canola peroxisome 54.87 54.97
Bra031265.1-P Field mustard peroxisome 55.42 54.92
Bra031263.1-P Field mustard peroxisome 54.69 54.79
CDY68920 Canola peroxisome 54.51 54.61
AT3G21230.1 Thale cress peroxisome 55.96 54.39
CDX82208 Canola peroxisome 55.6 53.85
Bra001819.1-P Field mustard peroxisome 55.42 53.48
CDY32416 Canola peroxisome 55.05 53.14
Bra001820.1-P Field mustard peroxisome 55.96 52.99
KRH19011 Soybean peroxisome 53.61 52.85
CDY06435 Canola vacuole 37.55 46.74
CDY65966 Canola peroxisome 27.26 42.78
CDY71190 Canola peroxisome 27.8 41.62
Os04t0310800-01 Rice peroxisome 38.63 38.56
Os03t0152400-01 Rice plasma membrane 38.09 38.22
Os03t0132000-01 Rice plasma membrane 36.82 36.96
Os10t0578950-00 Rice peroxisome 33.94 33.69
Os08t0143300-00 Rice peroxisome, plastid 35.92 33.67
Os07t0280200-01 Rice peroxisome 33.03 32.8
Os01t0901600-01 Rice peroxisome, plastid 33.75 31.27
Os07t0639100-00 Rice peroxisome 32.13 29.97
Os01t0901500-01 Rice plastid 23.47 29.41
Protein Annotations
Gene3D:3.30.300.30Gene3D:3.40.50.12780EntrezGene:4328485MapMan:7.8.1.1MapMan:9.2.1.3EMBL:AB234050
InterPro:AMP-bd_CInterPro:AMP-binding_CSInterPro:AMP-dep_Synth/LigEMBL:AP014958ProteinID:BAD27987.1ProteinID:BAF07983.1
ProteinID:EAZ21948.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524
GO:GO:0008150GO:GO:0008152GO:GO:0009698GO:GO:0009987GO:GO:0016207GO:GO:0016874
GO:GO:0019748EnsemblPlantsGene:Os02g0177600EnsemblPlants:Os02t0177600-01PFAM:PF00501PFAM:PF13193ScanProsite:PS00455
PANTHER:PTHR24096PANTHER:PTHR24096:SF149UniProt:Q6ETN3SUPFAM:SSF56801UniParc:UPI00003CE595RefSeq:XP_015625716.1
SEG:seg:::::
Description
4-COUMARATE:COENZYME A LIGASE 34-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os02t0177600-01)
Coordinates
chr2:+:4280502..4285929
Molecular Weight (calculated)
59643.9 Da
IEP (calculated)
4.791
GRAVY (calculated)
0.061
Length
554 amino acids
Sequence
(BLAST)
001: MGSVAAEEVV VFRSKLPDIE IDNSMTLQEY CFARMAEVGA RPCLIDGQTG ESYTYAEVES ASRRAAAGLR RMGVGKGDVV MSLLRNCPEF AFSFLGAARL
101: GAATTTANPF YTPHEVHRQA EAAGARVIVT EACAVEKVRE FAAERGVPVV TVDGAFDGCV EFREVLAAEE LDADADVHPD DVVALPYSSG TTGLPKGVML
201: THRSLITSVA QQVDGENPNL YFSKDDVILC LLPLFHIYSL NSVLLAGLRA GSTIVIMRKF DLGALVDLVR KHNITIAPFV PPIVVEIAKS PRVTAEDLAS
301: IRMVMSGAAP MGKDLQDAFM AKIPNAVLGQ GYGMTEAGPV LAMCLAFAKE PFKVKSGSCG TVVRNAELKI VDPDTGTSLG RNQSGEICIR GEQIMKGYLN
401: DPEATKNTID EDGWLHTGDI GFVDDDDEIF IVDRLKEIIK YKGFQVPPAE LEALLITHPE IKDAAVVSMK DDLAGEVPVA FIVRTEGSEI TEDEIKKFVA
501: KEVVFYKRIN KVFFTDSIPK NPSGKILRKD LRARLAAGIP DAVAAAAADA PKSS
Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)
001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN
Arabidopsis Description
4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.