Factsheet for Os08t0245200-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 1
extracellular 1
peroxisome 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13602	Sorghum	peroxisome	84.93	83.89
Zm00001d050224_P002	Maize	peroxisome	82.45	83.04
GSMUA_Achr9P22840_001	Banana	peroxisome	46.45	68.59
GSMUA_Achr1P23450_001	Banana	peroxisome	63.12	68.46
GSMUA_Achr4P12590_001	Banana	peroxisome	59.22	68.3
GSMUA_AchrUn_...	Banana	peroxisome	62.23	67.76
GSMUA_Achr4P05820_001	Banana	peroxisome	62.06	67.05
GSMUA_Achr7P05070_001	Banana	peroxisome	58.33	66.73
Os06t0656500-01	Rice	peroxisome	65.25	65.83
Os02t0177600-01	Rice	plasma membrane	64.36	65.52
Os08t0448000-01	Rice	peroxisome	61.7	64.56
CDY53918	Canola	peroxisome	21.1	63.64
CDY32418	Canola	peroxisome	20.57	63.39
CDY43921	Canola	peroxisome	60.46	61.89
CDX87831	Canola	peroxisome	60.28	61.71
Bra030429.1-P	Field mustard	peroxisome	60.28	61.59
PGSC0003DMT400074444	Potato	peroxisome	58.87	61.14
PGSC0003DMT400036886	Potato	peroxisome	59.04	61.1
Solyc06g068650.2.1	Tomato	peroxisome	58.69	60.96
VIT_11s0052g01110.t01	Wine grape	peroxisome	58.16	60.85
AT1G51680.1	Thale cress	peroxisome	60.46	60.78
Solyc03g117870.2.1	Tomato	plastid	58.51	60.55
VIT_11s0052g01090.t01	Wine grape	peroxisome	58.33	60.04
CDY19568	Canola	peroxisome	58.69	59.96
Bra031266.1-P	Field mustard	peroxisome	58.51	59.78
AT3G21240.1	Thale cress	peroxisome	58.51	59.35
KRH09616	Soybean	mitochondrion, peroxisome	55.85	58.55
KRH02884	Soybean	peroxisome	56.21	57.95
KRH02885	Soybean	peroxisome	54.96	57.84
Solyc12g042460.1.1	Tomato	peroxisome	55.85	57.48
PGSC0003DMT400051216	Potato	peroxisome	58.16	57.44
KRH23700	Soybean	peroxisome	55.67	57.4
Solyc07g008360.1.1	Tomato	peroxisome	57.8	57.39
PGSC0003DMT400037485	Potato	peroxisome	55.5	57.12
Os02t0697400-01	Rice	plasma membrane	57.27	56.77
AT3G21230.1	Thale cress	peroxisome	55.14	54.56
CDY48875	Canola	mitochondrion, plastid, vacuole	42.73	54.28
CDX82208	Canola	peroxisome	54.96	54.2
KRH02886	Soybean	peroxisome, plastid	54.08	54.08
Bra001819.1-P	Field mustard	peroxisome	54.61	53.66
CDY06431	Canola	peroxisome	52.48	53.53
CDY32416	Canola	peroxisome	54.43	53.48
CDY68920	Canola	peroxisome	52.3	53.35
Bra031263.1-P	Field mustard	peroxisome	52.3	53.35
Bra031265.1-P	Field mustard	peroxisome	52.13	52.59
CDY19570	Canola	peroxisome	51.95	52.41
KRH19011	Soybean	peroxisome	50.71	50.89
Bra001820.1-P	Field mustard	peroxisome	52.66	50.77
CDY65966	Canola	peroxisome	27.3	43.63
CDY06435	Canola	vacuole	34.4	43.6
CDY71190	Canola	peroxisome	27.3	41.62
Os03t0152400-01	Rice	plasma membrane	38.3	39.13
Os03t0132000-01	Rice	plasma membrane	37.41	38.22
Os04t0310800-01	Rice	peroxisome	37.23	37.84
Os10t0578950-00	Rice	peroxisome	35.11	35.48
Os07t0280200-01	Rice	peroxisome	34.22	34.59
Os08t0143300-00	Rice	peroxisome, plastid	35.64	34.01
Os01t0901600-01	Rice	peroxisome, plastid	35.46	33.44
Os07t0639100-00	Rice	peroxisome	33.69	31.99
Os01t0901500-01	Rice	plastid	24.29	31.0

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EntrezGene:4345054	MapMan:7.8.1.1	MapMan:9.2.1.3	EMBL:AK069932
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:BAD05189.1	ProteinID:BAF23267.1	ProteinID:BAT04523.1
ProteinID:CAA36850.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0009698	GO:GO:0009987	GO:GO:0016207	GO:GO:0016874
GO:GO:0019748	EnsemblPlantsGene:Os08g0245200	EnsemblPlants:Os08t0245200-01	UniProt:P17814	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF217	SUPFAM:SSF56801	UniParc:UPI00005B2E13	RefSeq:XP_015650724.1
SEG:seg	:	:	:	:	:

Description

4-COUMARATE:COENZYME A LIGASE 14-coumarate:coenzyme A ligase, Lignin biosynthesis (Os08t0245200-01)

Coordinates

chr8:+:8874179..8878862

Molecular Weight (calculated)

60905.7 Da

IEP (calculated)

5.119

GRAVY (calculated)

0.022

Length

564 amino acids

Sequence
(BLAST)

001: MGSMEQQQPE SAAPATEASP EIIFRSKLQD IAITNTLPLH RYCFERLPEV AARPCLIDGA TGGVLTYADV DRLSRRLAAA LRRAPLGLRR GGVVMSLLRN
101: SPEFVLSFFA ASRVGAAVTT ANPMSTPHEI ESQLAAAGAT VVITESMAAD KLPSHSHGAL TVVLIDERRD GCLHFWDDLM SEDEASPLAG DEDDEKVFDP
201: DDVVALPYSS GTTGLPKGVM LTHRSLSTSV AQQVDGENPN IGLHAGDVIL CALPMFHIYS LNTIMMCGLR VGAAIVVMRR FDLAAMMDLV ERHRVTIAPL
301: VPPIVVAVAK SEAAAARDLS SVRMVLSGAA PMGKDIEDAF MAKLPGAVLG QGYGMTEAGP VLSMCLAFAK EPFKVKSGAC GTVVRNAELK IIDPDTGKSL
401: GRNLPGEICI RGQQIMKGYL NNPEATKNTI DAEGWLHTGD IGYVDDDDEI FIVDRLKEII KYRGFQVAPA ELEALLITHP SIADAAVVGK QIEPEIGEIP
501: VAFVAKTEGS ELSEDDVKQF VAKEVIYYKK IREVFFVDKI PKAPSGKILR KELRKQLQHL QQEA

Best Arabidopsis Sequence Match ( AT1G51680.1 )
(BLAST)

001: MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC
101: PEFVLSFLAA SFRGATATAA NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF TELTQSTTEA SEVIDSVEIS
201: PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP
301: MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS
401: LSRNQPGEIC IRGHQIMKGY LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH PDITDVAVVA MKEEAAGEVP
501: VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI PKAPSGKILR KDLRAKLANG L

Arabidopsis Description

4CL14-coumarate-CoA ligase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1P8SNN0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.