Factsheet for GSMUA_Achr4P05820_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
vacuole 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12590_001	Banana	peroxisome	85.63	91.41
GSMUA_Achr9P22840_001	Banana	peroxisome	64.37	87.96
GSMUA_Achr1P23450_001	Banana	peroxisome	78.74	79.04
GSMUA_AchrUn_...	Banana	peroxisome	77.2	77.8
GSMUA_Achr7P05070_001	Banana	peroxisome	73.37	77.69
CDY53918	Canola	peroxisome	25.29	70.59
VIT_11s0052g01090.t01	Wine grape	peroxisome	73.56	70.07
PGSC0003DMT400074444	Potato	peroxisome	71.84	69.06
Solyc06g068650.2.1	Tomato	peroxisome	71.84	69.06
CDY32418	Canola	peroxisome	23.95	68.31
EER90150	Sorghum	peroxisome	72.41	67.86
Os02t0177600-01	Rice	plasma membrane	71.84	67.69
TraesCS7A01G496200.1	Wheat	peroxisome	72.03	67.5
VIT_11s0052g01110.t01	Wine grape	peroxisome	69.54	67.35
PGSC0003DMT400036886	Potato	peroxisome	70.31	67.34
TraesCS7D01G483400.1	Wheat	peroxisome	72.22	67.32
KRH02884	Soybean	peroxisome	70.5	67.28
KRH02885	Soybean	peroxisome	68.97	67.16
Os08t0448000-01	Rice	peroxisome	69.35	67.16
TraesCS6B01G179900.2	Wheat	peroxisome	70.5	67.15
Os06t0656500-01	Rice	peroxisome	71.84	67.08
TraesCS6A01G151700.1	Wheat	peroxisome	70.11	67.03
Solyc03g117870.2.1	Tomato	plastid	69.92	66.97
TraesCS6D01G141700.1	Wheat	peroxisome	70.31	66.85
HORVU6Hr1G030390.2	Barley	peroxisome	70.69	66.73
CDY19568	Canola	peroxisome	69.73	65.94
Bra031266.1-P	Field mustard	peroxisome	69.73	65.94
TraesCS2B01G171200.1	Wheat	peroxisome	68.2	65.93
EES04623	Sorghum	peroxisome	69.92	65.77
TraesCS2D01G150400.1	Wheat	peroxisome	68.01	65.74
CDY43921	Canola	peroxisome	69.16	65.52
KRH09616	Soybean	mitochondrion, peroxisome	67.43	65.43
EES15085	Sorghum	peroxisome	68.97	65.22
Bra030429.1-P	Field mustard	peroxisome	68.97	65.22
TraesCS2A01G145800.1	Wheat	peroxisome	67.62	65.13
CDX87831	Canola	peroxisome	68.58	64.97
Zm00001d032103_P001	Maize	peroxisome	68.97	64.86
PGSC0003DMT400051216	Potato	peroxisome	70.88	64.8
KRH23700	Soybean	peroxisome	67.82	64.72
AT3G21240.1	Thale cress	peroxisome	68.77	64.57
Solyc07g008360.1.1	Tomato	peroxisome	70.11	64.44
AT1G51680.1	Thale cress	peroxisome	69.16	64.35
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	72.03	63.73
PGSC0003DMT400037485	Potato	peroxisome	66.09	62.96
Solyc12g042460.1.1	Tomato	peroxisome	65.52	62.41
Os08t0245200-01	Rice	extracellular	67.05	62.06
Zm00001d015459_P003	Maize	peroxisome	69.54	61.84
Zm00001d050224_P002	Maize	peroxisome	65.71	61.25
EES13602	Sorghum	peroxisome	66.86	61.12
KRH02886	Soybean	peroxisome, plastid	64.56	59.75
Zm00001d046915_P001	Maize	extracellular	72.99	59.62
GSMUA_Achr11P...	Banana	peroxisome, plastid	60.73	59.47
CDY48875	Canola	mitochondrion, plastid, vacuole	49.62	58.33
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	59.39	57.62
CDX82208	Canola	peroxisome	62.07	56.64
CDY68920	Canola	peroxisome	59.96	56.6
CDY32416	Canola	peroxisome	62.07	56.45
AT3G21230.1	Thale cress	peroxisome	61.49	56.32
Bra001819.1-P	Field mustard	peroxisome	61.88	56.27
Bra031263.1-P	Field mustard	peroxisome	59.58	56.24
KRH19011	Soybean	peroxisome	60.54	56.23
CDY06431	Canola	peroxisome	59.0	55.7
Bra031265.1-P	Field mustard	peroxisome	59.39	55.46
CDY19570	Canola	peroxisome	59.39	55.46
Bra001820.1-P	Field mustard	peroxisome	59.96	53.5
CDY06435	Canola	vacuole	41.76	48.99
CDY65966	Canola	peroxisome	29.31	43.34
CDY71190	Canola	peroxisome	30.27	42.7
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	44.64	42.67
GSMUA_Achr8P13230_001	Banana	peroxisome	36.97	38.37
GSMUA_Achr8P14210_001	Banana	peroxisome	36.02	37.9
GSMUA_Achr6P36020_001	Banana	peroxisome	35.06	36.97
GSMUA_Achr5P19650_001	Banana	peroxisome	34.29	36.83
GSMUA_Achr9P07820_001	Banana	peroxisome	12.64	36.26
GSMUA_AchrUn_...	Banana	peroxisome	33.52	35.64
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	22.61	34.71
GSMUA_Achr5P25570_001	Banana	peroxisome	34.87	32.97
GSMUA_Achr11P...	Banana	peroxisome	33.52	32.17
GSMUA_Achr1P13470_001	Banana	peroxisome	31.42	31.78
GSMUA_AchrUn_...	Banana	peroxisome	30.46	28.96

Protein Annotations

EnsemblPlants:GSMUA_Achr4P05820_001	EnsemblPlants:GSMUA_Achr4T05820_001	EnsemblPlantsGene:GSMUA_Achr4G05820_001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR24096	PANTHER:PTHR24096:SF149	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI000296C50B	UniProt:M0SLE9	MapMan:7.8.1.1	MapMan:9.2.1.3	:

Description

4-coumarate--CoA ligase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G05820_001]

Coordinates

chr4:+:4529167..4532278

Molecular Weight (calculated)

56878.8 Da

IEP (calculated)

5.168

GRAVY (calculated)

0.075

Length

522 amino acids

Sequence
(BLAST)

001: MESYSMPEET IFRSKLPDIP IDNRRPLHAY CFERLADFAD RPCIIDGASG AVMSYADVIM ILLRNSPEFV VAFLAASHRG AVATTANPFY TPAEIHKQAA
101: ASGARVIVTE SCYVDKVREF AQERGVTVVC VDGPPEGCLH FSELLAADER DLPEVDIDPD DVVALPYSSG TTGLPKGVML THRGLITSVA QQVDGGNPNL
201: YFHEEDVLLC VLPLFHIYSL NSVLLCGLRA GAAILIMRKF EISAMLELVK RHRVTVAPLV PPIVLEIVKS PLVDSYDLSS VRTVLSGAAP MGKELVDKFM
301: ARLPNATLGQ GYGMTEAGPV LSMCLSFAKE PFPVKSGACG TVVRNAELKV VDPDTGASLG RNQPGEICIR GAQIMKGYLN DAKATRNTID EEDWLHTGDV
401: GFVDDDDEIF IVDRLKEIIK YKGFQVAPAE LEALLIAHHD IADAAVVPMK DEVAGEVPVA FVVRSSGSQI TEDEIKRYVS KQVVFYKRIN KVFFTEAIPK
501: APSGKILRKD LRAKLGSQFP SA

Best Arabidopsis Sequence Match ( AT1G51680.1 )
(BLAST)

001: MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC
101: PEFVLSFLAA SFRGATATAA NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF TELTQSTTEA SEVIDSVEIS
201: PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP
301: MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS
401: LSRNQPGEIC IRGHQIMKGY LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH PDITDVAVVA MKEEAAGEVP
501: VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI PKAPSGKILR KDLRAKLANG L

Arabidopsis Description

4CL14-coumarate-CoA ligase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1P8SNN0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.