Factsheet for GSMUA_Achr6P36020_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P17860_001	endoplasmic reticulum
GSMUA_Achr8P33230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	GSMUA_Achr8P33230_001	AT1G01280.1	23632852
AT1G62940.1	GSMUA_Achr5P17860_001	AT4G34850.1	23632852
AT1G62940.1	GSMUA_Achr5P17860_001	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	60.61	66.52
VIT_01s0010g03720.t01	Wine grape	peroxisome	71.31	63.6
AT1G62940.1	Thale cress	peroxisome	69.49	63.47
CDY39816	Canola	peroxisome	69.09	63.33
Os04t0310800-01	Rice	peroxisome	69.49	61.98
Solyc02g088710.2.1	Tomato	peroxisome	69.09	61.84
KRH46374	Soybean	peroxisome	68.28	61.12
KRG98485	Soybean	peroxisome	67.27	60.22
EER99996	Sorghum	plastid	71.72	58.68
TraesCS2B01G291100.1	Wheat	plastid	71.92	57.51
TraesCS2D01G272200.1	Wheat	plastid	71.92	57.51
TraesCS2A01G272900.1	Wheat	plastid	71.92	57.42
Zm00001d003702_P001	Maize	plastid	70.3	57.05
KXG26308	Sorghum	peroxisome	43.03	39.08
GSMUA_Achr9P22840_001	Banana	peroxisome	29.9	38.74
GSMUA_Achr7P05070_001	Banana	peroxisome	38.38	38.54
GSMUA_Achr9P07820_001	Banana	peroxisome	14.14	38.46
GSMUA_AchrUn_...	Banana	peroxisome	40.0	38.22
GSMUA_Achr1P23450_001	Banana	peroxisome	39.6	37.69
GSMUA_Achr8P14210_001	Banana	peroxisome	36.97	36.9
GSMUA_Achr4P12590_001	Banana	peroxisome	35.56	35.99
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	24.44	35.59
GSMUA_Achr4P05820_001	Banana	peroxisome	36.97	35.06
Zm00001d039274_P003	Maize	peroxisome	70.3	34.52
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	37.37	34.39
GSMUA_Achr5P19650_001	Banana	peroxisome	33.74	34.36
GSMUA_Achr11P...	Banana	peroxisome, plastid	36.57	33.96
GSMUA_AchrUn_...	Banana	peroxisome	37.17	33.52
GSMUA_Achr8P13230_001	Banana	peroxisome	33.94	33.4
GSMUA_Achr5P25570_001	Banana	peroxisome	36.77	32.97
GSMUA_AchrUn_...	Banana	peroxisome	32.53	32.79
GSMUA_Achr11P...	Banana	peroxisome	35.76	32.54
GSMUA_Achr1P13470_001	Banana	peroxisome	31.11	29.84
Bra036646.1-P	Field mustard	peroxisome	69.7	23.33
CDY03253	Canola	peroxisome	69.9	22.42

Protein Annotations

MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0031956
GO:GO:0046949	GO:GO:0080110	EnsemblPlantsGene:GSMUA_Achr6G36020_001	EnsemblPlants:GSMUA_Achr6P36020_001	EnsemblPlants:GSMUA_Achr6T36020_001	UniProt:M0TD45
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	SUPFAM:SSF56801
UniParc:UPI000294847B	SEG:seg	:	:	:	:

Description

4-coumarate--CoA ligase-like 9 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36020_001]

Coordinates

chr6:-:34083318..34085486

Molecular Weight (calculated)

54029.6 Da

IEP (calculated)

6.579

GRAVY (calculated)

0.002

Length

495 amino acids

Sequence
(BLAST)

001: MGDTCIDGEE QFIFRSKYSS VSIPEHVTLP EFVLGDAEAY ADKVAVVEAS TGKSYTYREV VRETSRFAKA LRLLGLRKGN VVVVALPNIA LYPIAKQVEN
101: SEAKFIVADK LAHDKVKDLG VPVILTGGDQ VKVSPGDLCA LPYSSGTTGC SKGVMLTHRN LVANLCSTLF CCGEEMVGQV TTLGLVPLFH IYGITGICCA
201: TLRSKGKVVA MDRFELRAFL HALIAHEVDF APIVPAIMLA MVKSPITNEF NLDKLKLKSV MTAAAPLAPE LRAAFEAKFP GVQVQEAYGL TEHSCITLTH
301: GDPRKGHGIA KKNSVGFILP NIEVKFVDPN TGRSLPKNTP GEVCVRSQCV MKGYYKNKEE TERTLDQEGW LHTGDIGYID DDGDLFIVDR MKELIKYKGF
401: QVAPAELEAI LVCHPSVEDA AVFSLPDEEA GEIPAACVVM GRDAKESEDD IMGYVASSVS TYKRVRMLNF VDSIPKSASG KIMRRVLRDN MINKN

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.