Factsheet for GSMUA_Achr5P17860_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P36020_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	GSMUA_Achr6P36020_001	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g01460.t01	Wine grape	cytosol	36.44	69.9
KRH29108	Soybean	cytosol	35.51	68.99
PGSC0003DMT400004133	Potato	cytosol	34.44	68.16
Solyc01g111070.2.1	Tomato	cytosol	34.71	68.15
CDX69091	Canola	cytosol	35.51	68.11
CDX75466	Canola	cytosol	35.51	68.11
CDY40656	Canola	cytosol	35.37	67.86
CDY34811	Canola	cytosol	35.37	67.86
Bra017681.1-P	Field mustard	cytosol	35.37	67.86
Bra011566.1-P	Field mustard	cytosol	35.37	67.86
Os07t0411300-00	Rice	cytosol	36.44	67.65
CDY58814	Canola	cytosol	35.24	67.6
Bra034658.1-P	Field mustard	cytosol	35.24	67.6
AT4G34850.1	Thale cress	cytosol	35.11	67.35
CDX72506	Canola	cytosol	35.11	67.35
CDY17490	Canola	cytosol	34.84	66.84
EER98407	Sorghum	cytosol	36.44	65.55
Zm00001d019478_P001	Maize	cytosol	36.17	65.23
TraesCS5A01G002900.1	Wheat	cytosol	36.17	64.45
TraesCS5B01G003100.1	Wheat	cytosol	35.9	64.44
TraesCS5D01G003600.1	Wheat	cytosol	36.04	64.37
KRH24136	Soybean	cytosol	31.65	63.13
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	35.9	59.08
GSMUA_Achr10P...	Banana	cytosol	17.29	40.12
GSMUA_Achr11P...	Banana	mitochondrion	18.75	39.17
GSMUA_Achr2P22970_001	Banana	mitochondrion	18.62	38.89
GSMUA_Achr10P...	Banana	mitochondrion	18.48	38.29
GSMUA_Achr3P22530_001	Banana	cytosol	15.82	38.26
GSMUA_Achr6P08990_001	Banana	mitochondrion	17.02	37.54
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	15.56	37.38
GSMUA_Achr6P08170_001	Banana	cytosol	18.09	36.96
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	16.09	36.89
GSMUA_Achr10P...	Banana	mitochondrion	16.49	36.15
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	17.55	36.07
GSMUA_Achr6P08180_001	Banana	cytosol	19.15	36.0
GSMUA_Achr10P...	Banana	mitochondrion	17.42	35.79
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	15.29	35.06
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	16.89	34.6
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	19.81	26.0

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr5G17860_001	EnsemblPlants:GSMUA_Achr5P17860_001	EnsemblPlants:GSMUA_Achr5T17860_001	InterPro:IPR016039	UniProt:M0SZG5	InterPro:Myb/SANT-like_dom
PFAM:PF00195	PFAM:PF02797	PFAM:PF12776	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000296D4FF	SEG:seg	:	:

Description

Putative Chalcone synthase 9 [Source:GMGC_GENE;Acc:GSMUA_Achr5G17860_001]

Coordinates

chr5:+:18962364..18966301

Molecular Weight (calculated)

83825.6 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.464

Length

752 amino acids

Sequence
(BLAST)

001: MGSFGGAESF SIKRGKATNI LALGKAFPKQ LVMQDLLVDG YFRNTNCTDP DLKKKLTRLC KTTTVKTRYL VMCDEILENH PELARDGQPT LRQRLEISHE
101: AVTEMAIEAS RSCVKAWGRP FAAITHLVYV SSSEARFPSG DLHLARALRL NPDVSRVMIS FAGCSGGVAG LRVAKDIAEN NPGSRVLLAT SETTIVGFRP
201: PNPHRPYDLV GAALFGDGAG AVVLGTDPIP GTETPMFELS SAIQQYLPDT DKTIQGELTE EGISFLLGRE LPLVIEDHVE AFCKKLAMEG LRGESHDVNY
301: NDMFWAMHPG GPAILNKVES RLRLCPDKLN ASRQALRDFG NASSNTIIYV LENIIEESRK KKESGESDCE WGLILAFGPG ITFEGILARN LMQKNTKRKR
401: CPRKHSSLRR LPPSPSPSAI AYVGIVPSPF SSVMADFTGS DFQVEENDTD IVDEGGFNVS VWPDEIEERF IYIMEAEVNK GNRTSTTFSK PAWRAIEETL
501: NTQTKRNYTY TQLRNKFNQL RTRQKDFANL MKETGVRWNP VTDSVSATDE VWERLYKVYK SAKRFRKKGC PLFNKLCVIY GDTTASDFCQ HISNNNPLDT
601: DDREEIDGMS LEASFNEQSG GTGVLSAVPI RSQSFNPSSS RRGKRNSFST LQTSSLTSPG ENSKKKSDTT ERKMTVTPSP SKSTSETGST LKKLIVESMQ
701: ALNALEGIDG VAYSKAVERF HEDYMWMELF LQMTEDRKKD WIYIENVTKN NL

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.