Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra034658.1-P | Field mustard | cytosol | 93.62 | 93.62 |
CDX75466 | Canola | cytosol | 93.62 | 93.62 |
Bra011566.1-P | Field mustard | cytosol | 93.11 | 93.11 |
CDY58814 | Canola | cytosol | 92.86 | 92.86 |
CDY40656 | Canola | cytosol | 92.86 | 92.86 |
CDY34811 | Canola | cytosol | 92.86 | 92.86 |
CDX69091 | Canola | cytosol | 92.6 | 92.6 |
CDY17490 | Canola | cytosol | 92.6 | 92.6 |
Bra017681.1-P | Field mustard | cytosol | 91.84 | 91.84 |
CDX72506 | Canola | cytosol | 91.58 | 91.58 |
KRH29108 | Soybean | cytosol | 80.87 | 81.91 |
PGSC0003DMT400004133 | Potato | cytosol | 79.08 | 81.58 |
VIT_03s0038g01460.t01 | Wine grape | cytosol | 80.61 | 80.61 |
Solyc01g111070.2.1 | Tomato | cytosol | 78.57 | 80.42 |
KRH24136 | Soybean | cytosol | 72.45 | 75.33 |
Os07t0411300-00 | Rice | cytosol | 68.88 | 66.67 |
EER98407 | Sorghum | cytosol | 69.13 | 64.83 |
Zm00001d019478_P001 | Maize | cytosol | 68.11 | 64.03 |
TraesCS5A01G002900.1 | Wheat | cytosol | 68.88 | 63.98 |
TraesCS5B01G003100.1 | Wheat | cytosol | 68.37 | 63.96 |
TraesCS5D01G003600.1 | Wheat | cytosol | 68.62 | 63.9 |
AT1G02050.1 | Thale cress | mitochondrion | 64.29 | 63.8 |
AT4G00040.1 | Thale cress | cytosol, mitochondrion | 61.22 | 62.34 |
HORVU5Hr1G000690.2 | Barley | cytosol, peroxisome | 68.37 | 58.64 |
AT5G13930.1 | Thale cress | cytosol | 39.29 | 38.99 |
GSMUA_Achr5P17860_001 | Banana | cytosol, nucleus, peroxisome | 67.35 | 35.11 |
Protein Annotations
MapMan:21.8.1.4 | Gene3D:3.40.47.10 | EntrezGene:829637 | UniProt:A0A178UTW2 | ProteinID:AEE86428.1 | ProteinID:ANM66731.1 |
ArrayExpress:AT4G34850 | EnsemblPlantsGene:AT4G34850 | RefSeq:AT4G34850 | TAIR:AT4G34850 | RefSeq:AT4G34850-TAIR-G | EnsemblPlants:AT4G34850.1 |
TAIR:AT4G34850.1 | EMBL:AY085918 | Unigene:At.69687 | ProteinID:CAB45446.1 | ProteinID:CAB80202.1 | InterPro:Chalcone/stilbene_synth_C |
InterPro:Chalcone/stilbene_synthase_N | EMBL:DQ062353 | EMBL:DQ062354 | EMBL:DQ062355 | EMBL:DQ062356 | EMBL:DQ062357 |
EMBL:DQ062359 | EMBL:DQ062360 | EMBL:DQ062362 | EMBL:DQ062365 | EMBL:DQ062366 | EMBL:DQ062369 |
EMBL:DQ062370 | EMBL:DQ062371 | EMBL:DQ062372 | EMBL:DQ062373 | EMBL:DQ062374 | EMBL:DQ062375 |
EMBL:DQ062377 | EMBL:DQ062378 | EMBL:DQ062379 | EMBL:DQ062381 | EMBL:DQ062382 | EMBL:DQ062383 |
EMBL:DQ062384 | EMBL:DQ446894 | EMBL:DQ653244 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009813 |
GO:GO:0009987 | GO:GO:0010584 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 |
GO:GO:0019748 | GO:GO:0030639 | GO:GO:0080110 | GO:GO:0090439 | InterPro:IPR016039 | Symbol:LAP5 |
RefSeq:NP_001328609.1 | RefSeq:NP_567971.1 | ProteinID:OAO97055.1 | PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 |
PO:PO:0001078 | PO:PO:0007611 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009066 |
PO:PO:0025022 | PO:PO:0025313 | PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III | UniProt:Q8LDM2 |
SUPFAM:SSF53901 | InterPro:Thiolase-like | UniParc:UPI00000A31A8 | : | : | : |
Description
PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
Coordinates
chr4:+:16608204..16609829
Molecular Weight (calculated)
42984.9 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.167
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.