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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034658.1-P Field mustard cytosol 93.62 93.62
CDX75466 Canola cytosol 93.62 93.62
Bra011566.1-P Field mustard cytosol 93.11 93.11
CDY58814 Canola cytosol 92.86 92.86
CDY40656 Canola cytosol 92.86 92.86
CDY34811 Canola cytosol 92.86 92.86
CDX69091 Canola cytosol 92.6 92.6
CDY17490 Canola cytosol 92.6 92.6
Bra017681.1-P Field mustard cytosol 91.84 91.84
CDX72506 Canola cytosol 91.58 91.58
KRH29108 Soybean cytosol 80.87 81.91
PGSC0003DMT400004133 Potato cytosol 79.08 81.58
VIT_03s0038g01460.t01 Wine grape cytosol 80.61 80.61
Solyc01g111070.2.1 Tomato cytosol 78.57 80.42
KRH24136 Soybean cytosol 72.45 75.33
Os07t0411300-00 Rice cytosol 68.88 66.67
EER98407 Sorghum cytosol 69.13 64.83
Zm00001d019478_P001 Maize cytosol 68.11 64.03
TraesCS5A01G002900.1 Wheat cytosol 68.88 63.98
TraesCS5B01G003100.1 Wheat cytosol 68.37 63.96
TraesCS5D01G003600.1 Wheat cytosol 68.62 63.9
AT1G02050.1 Thale cress mitochondrion 64.29 63.8
AT4G00040.1 Thale cress cytosol, mitochondrion 61.22 62.34
HORVU5Hr1G000690.2 Barley cytosol, peroxisome 68.37 58.64
AT5G13930.1 Thale cress cytosol 39.29 38.99
GSMUA_Achr5P17860_001 Banana cytosol, nucleus, peroxisome 67.35 35.11
Protein Annotations
MapMan:21.8.1.4Gene3D:3.40.47.10EntrezGene:829637UniProt:A0A178UTW2ProteinID:AEE86428.1ProteinID:ANM66731.1
ArrayExpress:AT4G34850EnsemblPlantsGene:AT4G34850RefSeq:AT4G34850TAIR:AT4G34850RefSeq:AT4G34850-TAIR-GEnsemblPlants:AT4G34850.1
TAIR:AT4G34850.1EMBL:AY085918Unigene:At.69687ProteinID:CAB45446.1ProteinID:CAB80202.1InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_NEMBL:DQ062353EMBL:DQ062354EMBL:DQ062355EMBL:DQ062356EMBL:DQ062357
EMBL:DQ062359EMBL:DQ062360EMBL:DQ062362EMBL:DQ062365EMBL:DQ062366EMBL:DQ062369
EMBL:DQ062370EMBL:DQ062371EMBL:DQ062372EMBL:DQ062373EMBL:DQ062374EMBL:DQ062375
EMBL:DQ062377EMBL:DQ062378EMBL:DQ062379EMBL:DQ062381EMBL:DQ062382EMBL:DQ062383
EMBL:DQ062384EMBL:DQ446894EMBL:DQ653244GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009653GO:GO:0009813
GO:GO:0009987GO:GO:0010584GO:GO:0016043GO:GO:0016740GO:GO:0016746GO:GO:0016747
GO:GO:0019748GO:GO:0030639GO:GO:0080110GO:GO:0090439InterPro:IPR016039Symbol:LAP5
RefSeq:NP_001328609.1RefSeq:NP_567971.1ProteinID:OAO97055.1PFAM:PF00195PFAM:PF02797PIRSF:PIRSF000451
PO:PO:0001078PO:PO:0007611PO:PO:0009010PO:PO:0009031PO:PO:0009046PO:PO:0009066
PO:PO:0025022PO:PO:0025313PANTHER:PTHR11877PANTHER:PTHR11877:SF31InterPro:Polyketide_synthase_type-IIIUniProt:Q8LDM2
SUPFAM:SSF53901InterPro:Thiolase-likeUniParc:UPI00000A31A8:::
Description
PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
Coordinates
chr4:+:16608204..16609829
Molecular Weight (calculated)
42984.9 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.167
Length
392 amino acids
Sequence
(BLAST)
001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.