Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G272900.1 | |
| TraesCS2B01G291100.1 | |
| TraesCS2D01G272200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34850.1 | TraesCS2A01G272900.1 | AT1G62940.1 | 23632852 |
| AT4G34850.1 | TraesCS2B01G291100.1 | AT1G62940.1 | 23632852 |
| AT4G34850.1 | TraesCS2D01G272200.1 | AT1G62940.1 | 23632852 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G002900.1 | Wheat | cytosol | 96.9 | 96.21 |
| TraesCS5D01G003600.1 | Wheat | cytosol | 96.18 | 95.72 |
| Os07t0411300-00 | Rice | cytosol | 85.2 | 88.15 |
| HORVU5Hr1G000690.2 | Barley | cytosol, peroxisome | 93.56 | 85.78 |
| Zm00001d019478_P001 | Maize | cytosol | 81.62 | 82.01 |
| EER98407 | Sorghum | cytosol | 81.62 | 81.82 |
| KRH29108 | Soybean | cytosol | 65.16 | 70.54 |
| VIT_03s0038g01460.t01 | Wine grape | cytosol | 65.87 | 70.41 |
| CDX75466 | Canola | cytosol | 65.16 | 69.64 |
| Bra011566.1-P | Field mustard | cytosol | 64.92 | 69.39 |
| CDX69091 | Canola | cytosol | 64.92 | 69.39 |
| PGSC0003DMT400004133 | Potato | cytosol | 62.77 | 69.21 |
| CDY34811 | Canola | cytosol | 64.68 | 69.13 |
| CDY58814 | Canola | cytosol | 64.44 | 68.88 |
| Bra034658.1-P | Field mustard | cytosol | 64.44 | 68.88 |
| Solyc01g111070.2.1 | Tomato | cytosol | 62.53 | 68.41 |
| CDY40656 | Canola | cytosol | 63.96 | 68.37 |
| AT4G34850.1 | Thale cress | cytosol | 63.96 | 68.37 |
| Bra017681.1-P | Field mustard | cytosol | 63.96 | 68.37 |
| CDY17490 | Canola | cytosol | 63.72 | 68.11 |
| CDX72506 | Canola | cytosol | 63.72 | 68.11 |
| KRH24136 | Soybean | cytosol | 59.19 | 65.78 |
| TraesCS1B01G176300.1 | Wheat | cytosol | 49.4 | 53.08 |
| TraesCS4B01G357700.1 | Wheat | mitochondrion | 23.63 | 41.77 |
| TraesCS4B01G357600.1 | Wheat | mitochondrion | 24.11 | 41.74 |
| TraesCS4B01G357800.1 | Wheat | cytosol | 29.36 | 41.28 |
| TraesCS1B01G040300.1 | Wheat | cytosol, mitochondrion | 38.19 | 40.51 |
| TraesCS2B01G041300.1 | Wheat | cytosol | 37.23 | 40.41 |
| TraesCS1B01G040500.1 | Wheat | cytosol | 38.42 | 40.35 |
| TraesCS1B01G040000.1 | Wheat | cytosol, mitochondrion | 37.95 | 40.25 |
| TraesCS1B01G041000.1 | Wheat | cytosol | 37.95 | 40.25 |
| TraesCS1B01G040100.1 | Wheat | cytosol | 37.47 | 39.75 |
| TraesCS1B01G040200.1 | Wheat | cytosol, mitochondrion | 37.95 | 39.55 |
| TraesCS6B01G327900.1 | Wheat | cytosol | 30.79 | 38.62 |
| TraesCS5B01G383300.1 | Wheat | cytosol, mitochondrion | 35.8 | 38.56 |
| TraesCS2B01G038600.1 | Wheat | cytosol | 33.17 | 38.4 |
| TraesCS2B01G038700.1 | Wheat | cytosol | 35.8 | 38.07 |
| TraesCS2B01G558400.1 | Wheat | cytosol | 36.04 | 37.94 |
| TraesCS2B01G048400.1 | Wheat | cytosol | 35.56 | 37.82 |
| TraesCS4B01G357100.1 | Wheat | mitochondrion | 29.59 | 37.69 |
| TraesCS2B01G613100.1 | Wheat | cytosol | 35.8 | 37.59 |
| TraesCS6B01G022300.1 | Wheat | cytosol | 36.04 | 37.56 |
| TraesCS7B01G462200.1 | Wheat | cytosol | 26.73 | 37.46 |
| TraesCS2B01G072600.1 | Wheat | mitochondrion | 35.8 | 37.41 |
| TraesCS5B01G487700.1 | Wheat | cytosol | 35.32 | 37.37 |
| TraesCS6B01G245200.1 | Wheat | mitochondrion | 29.83 | 37.2 |
| TraesCS6B01G022500.1 | Wheat | cytosol | 36.04 | 36.74 |
| TraesCS4B01G021600.1 | Wheat | cytosol | 35.08 | 36.66 |
| TraesCS2B01G007000.1 | Wheat | cytosol | 34.84 | 36.5 |
| TraesCS2B01G006800.1 | Wheat | cytosol | 31.98 | 36.02 |
| GSMUA_Achr5P17860_001 | Banana | cytosol, nucleus, peroxisome | 64.44 | 35.9 |
| TraesCS6B01G185200.2 | Wheat | cytosol, mitochondrion, plastid | 33.17 | 35.73 |
| TraesCS2B01G006000.1 | Wheat | cytosol | 33.41 | 35.53 |
| TraesCS2B01G006700.1 | Wheat | cytosol | 33.17 | 35.28 |
| TraesCS2B01G019200.1 | Wheat | cytosol | 32.94 | 34.76 |
| TraesCS7B01G371700.1 | Wheat | plastid | 33.65 | 32.12 |
| TraesCS2B01G006300.1 | Wheat | extracellular, golgi | 33.17 | 30.09 |
Protein Annotations
| MapMan:21.8.1.4 | Gene3D:3.40.47.10 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010584 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016747 | GO:GO:0019748 | GO:GO:0030639 | GO:GO:0080110 |
| GO:GO:0090439 | InterPro:IPR016039 | PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 | PANTHER:PTHR11877 |
| PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III | SUPFAM:SSF53901 | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS5B01G003100 | EnsemblPlants:TraesCS5B01G003100.1 |
| TIGR:cd00831 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:4831150..4832510
Molecular Weight (calculated)
45081.1 Da
IEP (calculated)
5.721
GRAVY (calculated)
-0.174
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSARDVDTT AAANKQQQAN CLAPNPGKAT ILALGHAFPQ QLVMQDYVVE GFMRNTNCND PELKEKLARL CKTTTVKTRY VVMSDEILKS YPELAQEGLP
101: TMKQRLDISN KAVTQMATEA SLACIKAWGG DLSAITHLVY VSSSEARFPG GDLHLARALG LSPDVRRVML AFTGCSGGVA GLRVAKGLAE SCPGARVLLA
201: TSETTVAGFR PPSPDRPYDL VGVALFGDGA GAAVVGTDPT AQERPLFELY SALQRFLPDT EKTIDGRLTE EGIKFQLGRE LPHIIEAHVE SFCQKLIKEH
301: PSAAAAEGDN MLTYDKMFWA VHPGGPAILT KMEGRLGLDG GKLRASRSAL RDFGNASSNT IVYVLENMVE ESRQRTEAPE PEPEGGQEQC EWGLILAFGP
401: GITLEGILAR NLQARLGAN
101: TMKQRLDISN KAVTQMATEA SLACIKAWGG DLSAITHLVY VSSSEARFPG GDLHLARALG LSPDVRRVML AFTGCSGGVA GLRVAKGLAE SCPGARVLLA
201: TSETTVAGFR PPSPDRPYDL VGVALFGDGA GAAVVGTDPT AQERPLFELY SALQRFLPDT EKTIDGRLTE EGIKFQLGRE LPHIIEAHVE SFCQKLIKEH
301: PSAAAAEGDN MLTYDKMFWA VHPGGPAILT KMEGRLGLDG GKLRASRSAL RDFGNASSNT IVYVLENMVE ESRQRTEAPE PEPEGGQEQC EWGLILAFGP
401: GITLEGILAR NLQARLGAN
001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
Arabidopsis Description
PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.