Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g088710.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34850.1 | Solyc02g088710.2.1 | AT1G62940.1 | 23632852 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004133 | Potato | cytosol | 97.65 | 98.42 |
| KRH29108 | Soybean | cytosol | 82.25 | 81.4 |
| VIT_03s0038g01460.t01 | Wine grape | cytosol | 82.25 | 80.36 |
| CDX75466 | Canola | cytosol | 80.68 | 78.83 |
| Bra011566.1-P | Field mustard | cytosol | 80.42 | 78.57 |
| AT4G34850.1 | Thale cress | cytosol | 80.42 | 78.57 |
| CDX69091 | Canola | cytosol | 80.16 | 78.32 |
| CDY34811 | Canola | cytosol | 79.9 | 78.06 |
| Bra017681.1-P | Field mustard | cytosol | 79.37 | 77.55 |
| CDX72506 | Canola | cytosol | 79.37 | 77.55 |
| CDY40656 | Canola | cytosol | 79.37 | 77.55 |
| Bra034658.1-P | Field mustard | cytosol | 79.11 | 77.3 |
| CDY17490 | Canola | cytosol | 78.59 | 76.79 |
| CDY58814 | Canola | cytosol | 78.59 | 76.79 |
| KRH24136 | Soybean | cytosol | 74.41 | 75.6 |
| Os07t0411300-00 | Rice | cytosol | 68.67 | 64.94 |
| EER98407 | Sorghum | cytosol | 70.5 | 64.59 |
| Zm00001d019478_P001 | Maize | cytosol | 69.45 | 63.79 |
| TraesCS5A01G002900.1 | Wheat | cytosol | 69.19 | 62.8 |
| TraesCS5B01G003100.1 | Wheat | cytosol | 68.41 | 62.53 |
| TraesCS5D01G003600.1 | Wheat | cytosol | 68.15 | 62.0 |
| Solyc01g090600.2.1 | Tomato | cytosol, extracellular, mitochondrion, peroxisome | 55.87 | 59.78 |
| HORVU5Hr1G000690.2 | Barley | cytosol, peroxisome | 68.67 | 57.55 |
| Solyc09g091510.2.1 | Tomato | cytosol, extracellular | 44.91 | 44.22 |
| Solyc05g053550.2.1 | Tomato | cytosol, mitochondrion | 44.65 | 43.96 |
| Solyc05g053170.2.1 | Tomato | cytosol | 39.16 | 38.27 |
| Solyc12g098090.1.1 | Tomato | cytosol | 41.78 | 36.53 |
| GSMUA_Achr5P17860_001 | Banana | cytosol, nucleus, peroxisome | 68.15 | 34.71 |
Protein Annotations
| MapMan:21.8.1.4 | Gene3D:3.40.47.10 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010584 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | GO:GO:0019748 | GO:GO:0030639 |
| GO:GO:0080110 | GO:GO:0090439 | InterPro:IPR016039 | UniProt:K4B3X0 | PFAM:PF00195 | PFAM:PF02797 |
| PIRSF:PIRSF000451 | PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III | SUPFAM:SSF53901 | EnsemblPlantsGene:Solyc01g111070.2 |
| EnsemblPlants:Solyc01g111070.2.1 | InterPro:Thiolase-like | UniParc:UPI000276918C | : | : | : |
Description
No Description!
Coordinates
chr1:+:97462625..97464929
Molecular Weight (calculated)
42410.4 Da
IEP (calculated)
5.356
GRAVY (calculated)
-0.113
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILEKMEGR NEINFGNATI LALGKAFPHQ LVMQEFLVDG YFKNTNCDDP ELKQRLTRLC KTTTVKTRYV VMSEEILKKY PELAVEGLPT VKQRLDICNA
101: AVTEMAIEAS QSCIKKWGRP ISDITHVVYV SSSEARLPGG DLYLAKGLGL NPETKRVMLY FAGCSGGVAG LRVAKDIAEN NPGSRVLLAT SETTIIGFKP
201: PSVDRPYDLV GVALFGDGAG AMIIGSNPIR DIERPLFELH TAIQHFLPDT EKIIDGRLTE EGISFKLERE LPQIIEDNIE DFCDKLINIS GIKDREYNKL
301: FWAVHPGGPA ILNRLEKKLD LSPDKLSASR RALADYGNAS SNTIVYVLEY MLEEKKDITD WGLILAFGPG ITFEGILTKN LTI
101: AVTEMAIEAS QSCIKKWGRP ISDITHVVYV SSSEARLPGG DLYLAKGLGL NPETKRVMLY FAGCSGGVAG LRVAKDIAEN NPGSRVLLAT SETTIIGFKP
201: PSVDRPYDLV GVALFGDGAG AMIIGSNPIR DIERPLFELH TAIQHFLPDT EKIIDGRLTE EGISFKLERE LPQIIEDNIE DFCDKLINIS GIKDREYNKL
301: FWAVHPGGPA ILNRLEKKLD LSPDKLSASR RALADYGNAS SNTIVYVLEY MLEEKKDITD WGLILAFGPG ITFEGILTKN LTI
001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
Arabidopsis Description
PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.