Factsheet for TraesCS5D01G003600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G272900.1
TraesCS2B01G291100.1
TraesCS2D01G272200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	TraesCS2A01G272900.1	AT1G62940.1	23632852
AT4G34850.1	TraesCS2B01G291100.1	AT1G62940.1	23632852
AT4G34850.1	TraesCS2D01G272200.1	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G003100.1	Wheat	cytosol	95.72	96.18
TraesCS5A01G002900.1	Wheat	cytosol	95.96	95.73
Os07t0411300-00	Rice	cytosol	85.04	88.4
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	93.35	86.0
EER98407	Sorghum	cytosol	81.47	82.06
Zm00001d019478_P001	Maize	cytosol	81.24	82.01
KRH29108	Soybean	cytosol	65.08	70.8
VIT_03s0038g01460.t01	Wine grape	cytosol	65.32	70.15
CDX75466	Canola	cytosol	65.08	69.9
Bra011566.1-P	Field mustard	cytosol	64.85	69.64
CDX69091	Canola	cytosol	64.85	69.64
CDY34811	Canola	cytosol	64.61	69.39
CDY58814	Canola	cytosol	64.37	69.13
Bra034658.1-P	Field mustard	cytosol	64.37	69.13
PGSC0003DMT400004133	Potato	cytosol	62.23	68.95
CDY40656	Canola	cytosol	63.9	68.62
AT4G34850.1	Thale cress	cytosol	63.9	68.62
Bra017681.1-P	Field mustard	cytosol	63.9	68.62
CDX72506	Canola	cytosol	63.66	68.37
Solyc01g111070.2.1	Tomato	cytosol	62.0	68.15
CDY17490	Canola	cytosol	63.42	68.11
KRH24136	Soybean	cytosol	58.91	65.78
TraesCS1D01G157500.1	Wheat	cytosol	49.17	53.08
TraesCS6D01G197900.1	Wheat	cytosol	28.74	41.72
TraesCS2D01G030600.1	Wheat	mitochondrion	36.58	39.9
TraesCS1D01G033600.1	Wheat	cytosol	37.29	39.35
TraesCS1D01G359600.1	Wheat	cytosol	36.82	39.34
TraesCS4D01G351300.1	Wheat	mitochondrion	37.05	39.2
TraesCS1D01G033800.1	Wheat	cytosol	37.05	39.2
TraesCS5D01G488700.1	Wheat	cytosol	36.34	38.73
TraesCS5D01G488600.1	Wheat	cytosol	36.34	38.73
TraesCS6D01G278200.1	Wheat	cytosol	36.34	38.15
TraesCS2D01G027900.2	Wheat	cytosol	35.39	37.82
TraesCS2D01G022700.1	Wheat	cytosol, mitochondrion, plastid	35.63	37.5
TraesCS2D01G027700.1	Wheat	cytosol	34.92	37.31
TraesCS2D01G034500.1	Wheat	cytosol	34.68	36.96
TraesCS3D01G500500.1	Wheat	cytosol	35.15	36.91
TraesCS2D01G051300.1	Wheat	cytosol	35.15	36.91
TraesCS7D01G089300.1	Wheat	mitochondrion	34.68	36.78
TraesCS7D01G046500.1	Wheat	unclear	33.97	36.2
TraesCS2D01G016100.1	Wheat	cytosol	33.73	36.04
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	64.37	36.04
TraesCS2D01G016200.1	Wheat	cytosol	33.73	35.59
TraesCS7D01G046700.1	Wheat	cytosol, mitochondrion	32.78	34.94
TraesCS6D01G018500.1	Wheat	plastid	35.87	34.47
TraesCS2D01G027800.1	Wheat	cytosol	17.1	34.12
TraesCS7D01G047000.1	Wheat	cytosol, plastid	31.83	33.67
TraesCS2D01G530600.1	Wheat	cytosol, plastid	34.68	30.54

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010584
GO:GO:0016043	GO:GO:0016740	GO:GO:0016747	GO:GO:0019748	GO:GO:0030639	GO:GO:0080110
GO:GO:0090439	InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877
PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	EnsemblPlantsGene:TraesCS5D01G003600	EnsemblPlants:TraesCS5D01G003600.1
TIGR:cd00831	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:3547841..3549199

Molecular Weight (calculated)

45115.2 Da

IEP (calculated)

5.692

GRAVY (calculated)

-0.134

Length

421 amino acids

Sequence
(BLAST)

001: MVSARGVDTT TAANKQQQAT CLAPNPGKAT ILALGHAFPQ QLVMQDYVVE GFMRNTNCND PELKEKLARL CKTTTVKTRY VVMSDEILKS YPELAQEGLP
101: TMKQRLDISN KAVTQMATEA SLACVKAWGG DLSAITHLVY VSSSEARFPG GDLHLARALG LSPDVRRVML AFTGCSGGVA GLRVAKGLAE SCPGARVLLA
201: TSETTVAGFR PPSPDRPYDL VGVALFGDGA GAAVVGTDPT PLECPLFELH SALQRFLPGT EKTIDGRLTE EGIKFQLGRE LPHIIEAHVE SFCQKLIKEH
301: PAAAAAEGDN MLTYDKMFWA VHPGGPAILT KMEGRLGLDG GKLRASRSAL RDFGNASSNT IVYVLENMVE ESRQRAEAPE PEPEPEGADQ ECEWGLILAF
401: GPGITFEGIL ARNLQARLGA N

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.