Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G272900.1 | |
| TraesCS2B01G291100.1 | |
| TraesCS2D01G272200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02050.1 | TraesCS2A01G272900.1 | AT1G62940.1 | 23632852 |
| AT1G02050.1 | TraesCS2B01G291100.1 | AT1G62940.1 | 23632852 |
| AT1G02050.1 | TraesCS2D01G272200.1 | AT1G62940.1 | 23632852 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G176300.1 | Wheat | cytosol | 98.21 | 98.21 |
| TraesCS1A01G160300.1 | Wheat | cytosol | 97.95 | 97.95 |
| Os10t0484800-01 | Rice | cytosol | 91.28 | 91.52 |
| Zm00001d032662_P001 | Maize | plastid | 84.87 | 84.87 |
| Zm00001d013991_P001 | Maize | mitochondrion | 83.85 | 77.67 |
| HORVU1Hr1G042510.2 | Barley | cytosol | 96.67 | 77.57 |
| EER91459 | Sorghum | cytosol | 85.64 | 68.87 |
| VIT_15s0021g02170.t01 | Wine grape | cytosol | 63.08 | 63.24 |
| KRH75257 | Soybean | cytosol | 62.82 | 63.14 |
| CDX93339 | Canola | mitochondrion | 63.08 | 62.6 |
| CDY18415 | Canola | cytosol, mitochondrion | 62.82 | 62.34 |
| AT1G02050.1 | Thale cress | mitochondrion | 62.82 | 62.03 |
| PGSC0003DMT400095725 | Potato | plastid | 61.54 | 60.61 |
| AT4G00040.1 | Thale cress | cytosol, mitochondrion | 59.74 | 60.52 |
| Bra000559.1-P | Field mustard | mitochondrion | 59.74 | 59.44 |
| CDX83215 | Canola | mitochondrion | 59.74 | 59.44 |
| CDY21499 | Canola | mitochondrion | 59.49 | 59.18 |
| Solyc01g090600.2.1 | Tomato | cytosol, extracellular, mitochondrion, peroxisome | 53.59 | 58.38 |
| TraesCS5D01G003600.1 | Wheat | cytosol | 53.08 | 49.17 |
| TraesCS6D01G197900.1 | Wheat | cytosol | 33.59 | 45.17 |
| TraesCS2D01G030600.1 | Wheat | mitochondrion | 39.23 | 39.64 |
| TraesCS1D01G359600.1 | Wheat | cytosol | 38.21 | 37.82 |
| TraesCS2D01G022700.1 | Wheat | cytosol, mitochondrion, plastid | 38.46 | 37.5 |
| TraesCS6D01G278200.1 | Wheat | cytosol | 38.21 | 37.16 |
| TraesCS1D01G033600.1 | Wheat | cytosol | 37.95 | 37.09 |
| TraesCS1D01G033800.1 | Wheat | cytosol | 37.69 | 36.93 |
| TraesCS4D01G351300.1 | Wheat | mitochondrion | 37.69 | 36.93 |
| TraesCS2D01G027900.2 | Wheat | cytosol | 36.67 | 36.29 |
| TraesCS7D01G047000.1 | Wheat | cytosol, plastid | 36.92 | 36.18 |
| TraesCS2D01G051300.1 | Wheat | cytosol | 37.18 | 36.16 |
| TraesCS3D01G500500.1 | Wheat | cytosol | 37.18 | 36.16 |
| TraesCS2D01G016200.1 | Wheat | cytosol | 36.92 | 36.09 |
| TraesCS2D01G027700.1 | Wheat | cytosol | 36.41 | 36.04 |
| TraesCS2D01G034500.1 | Wheat | cytosol | 36.41 | 35.95 |
| TraesCS7D01G089300.1 | Wheat | mitochondrion | 36.15 | 35.52 |
| TraesCS2D01G016100.1 | Wheat | cytosol | 35.64 | 35.28 |
| TraesCS7D01G046500.1 | Wheat | unclear | 35.64 | 35.19 |
| TraesCS5D01G488700.1 | Wheat | cytosol | 35.38 | 34.94 |
| TraesCS5D01G488600.1 | Wheat | cytosol | 35.38 | 34.94 |
| TraesCS6D01G018500.1 | Wheat | plastid | 38.97 | 34.7 |
| TraesCS2D01G027800.1 | Wheat | cytosol | 18.72 | 34.6 |
| TraesCS7D01G046700.1 | Wheat | cytosol, mitochondrion | 34.62 | 34.18 |
| TraesCS2D01G530600.1 | Wheat | cytosol, plastid | 36.92 | 30.13 |
| Bra017147.1-P | Field mustard | cytosol, peroxisome, plastid | 62.82 | 27.4 |
Protein Annotations
| MapMan:21.8.1.4 | Gene3D:3.40.47.10 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016740 | GO:GO:0016747 | InterPro:IPR016039 |
| PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 | PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III |
| SUPFAM:SSF53901 | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS1D01G157500 | EnsemblPlants:TraesCS1D01G157500.1 | TIGR:cd00831 | SEG:seg |
Description
No Description!
Coordinates
chr1D:+:222015879..222018038
Molecular Weight (calculated)
41776.4 Da
IEP (calculated)
4.993
GRAVY (calculated)
-0.039
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLGGLGSI GGGGNGISHG SGGKAKLLAL GKGLPEQVLP QEKLVETYLQ DTSCDDPATR AKLERLCKTT TVRTRYTVMS KELLDEYPEL KTEGSPTLTP
101: RLDICNAAVL ELGAAAARAA LGEWGRPAAD ITHLVYISSS ELRLPGGDLF LATRLGLSPN TVRTSLLFLG CSGGAAALRT AKDIAENNPG SRVLVIAAET
201: TVLGFRPPSP DRPYDLVGAA LFGDGASAAI IGASPIKAEE DPFLELEFST QEFLPGTDKV IDGKISEEGI NFKLGRDLPE KIESRIEGFC RILMDKVGIK
301: EFNDVFWAVH PGGPAILNRL EVCLELEPDK LKISRKALMN YGNVSSNTVF YVLEYLRDEL KKGAIREEWG LILAFGPGIT FEGMLVRGIN
101: RLDICNAAVL ELGAAAARAA LGEWGRPAAD ITHLVYISSS ELRLPGGDLF LATRLGLSPN TVRTSLLFLG CSGGAAALRT AKDIAENNPG SRVLVIAAET
201: TVLGFRPPSP DRPYDLVGAA LFGDGASAAI IGASPIKAEE DPFLELEFST QEFLPGTDKV IDGKISEEGI NFKLGRDLPE KIESRIEGFC RILMDKVGIK
301: EFNDVFWAVH PGGPAILNRL EVCLELEPDK LKISRKALMN YGNVSSNTVF YVLEYLRDEL KKGAIREEWG LILAFGPGIT FEGMLVRGIN
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
Arabidopsis Description
PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.