Factsheet for Solyc01g090600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 1
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g088710.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02050.1	Solyc02g088710.2.1	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095725	Potato	plastid	95.53	86.36
VIT_15s0021g02170.t01	Wine grape	cytosol	77.37	71.21
KRH75257	Soybean	cytosol	75.42	69.59
CDY18415	Canola	cytosol, mitochondrion	72.35	65.9
CDX93339	Canola	mitochondrion	72.07	65.65
AT1G02050.1	Thale cress	mitochondrion	72.07	65.32
AT4G00040.1	Thale cress	cytosol, mitochondrion	66.2	61.56
CDY21499	Canola	mitochondrion	66.2	60.46
CDX83215	Canola	mitochondrion	66.2	60.46
Bra000559.1-P	Field mustard	mitochondrion	66.2	60.46
Solyc01g111070.2.1	Tomato	cytosol	59.78	55.87
Os10t0484800-01	Rice	cytosol	58.66	53.98
TraesCS1D01G157500.1	Wheat	cytosol	58.38	53.59
TraesCS1B01G176300.1	Wheat	cytosol	58.38	53.59
TraesCS1A01G160300.1	Wheat	cytosol	58.38	53.59
Zm00001d032662_P001	Maize	plastid	56.7	52.05
Zm00001d013991_P001	Maize	mitochondrion	55.59	47.27
HORVU1Hr1G042510.2	Barley	cytosol	58.1	42.8
EER91459	Sorghum	cytosol	56.15	41.44
Solyc09g091510.2.1	Tomato	cytosol, extracellular	39.66	36.5
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	38.27	35.22
Solyc05g053170.2.1	Tomato	cytosol	35.75	32.65
Solyc12g098090.1.1	Tomato	cytosol	36.31	29.68
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	72.07	28.86

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	UniProt:K4AZ01	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451
PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc01g090600.2	EnsemblPlants:Solyc01g090600.2.1
InterPro:Thiolase-like	UniParc:UPI0002761F5A	:	:	:	:

Description

No Description!

Coordinates

chr1:-:84269539..84271141

Molecular Weight (calculated)

39847.3 Da

IEP (calculated)

6.091

GRAVY (calculated)

-0.236

Length

358 amino acids

Sequence
(BLAST)

001: MSHNNKNVNG ASNHFLRLPT PGKATILAIG KALPPQLVPQ DCLVEGYMRD TNCKDLRIKE KLERLCKTTT VKTRYTVMSK EILEKYPELA TEGTPTINQR
101: LEIANEAVVE MAKEASLACI KEWGRSVDEI SHIVYVSSSE IRLPGGDLHL STELGLRSDV GRVMLYFLGC YGGVTGLRVA KDIAENNPAA AVIIGTEPII
201: GTESPFIELN FAMQQFLPGT KNVIDGRLTD EGINFKLGRD LPEKIQENIE EFCKKLIAKR DELQGSNYND LFWAVHPGGP AILDRLEKTM KLQNEKLNCS
301: RKALMDFGNV SSNTIFYVIE NMREEMKNKK DAGEEWGLAL AFGPGITFEG ILLRSLLI

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.