CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98485
KRH46374

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02050.1	KRG98485	AT1G62940.1	23632852
AT1G02050.1	KRH46374	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02170.t01	Wine grape	cytosol	82.99	82.78
PGSC0003DMT400095725	Potato	plastid	80.15	78.54
CDX93339	Canola	mitochondrion	79.38	78.37
CDY18415	Canola	cytosol, mitochondrion	79.38	78.37
AT1G02050.1	Thale cress	mitochondrion	78.87	77.47
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	69.59	75.42
AT4G00040.1	Thale cress	cytosol, mitochondrion	72.42	72.99
Bra000559.1-P	Field mustard	mitochondrion	73.45	72.7
CDX83215	Canola	mitochondrion	73.2	72.45
CDY21499	Canola	mitochondrion	73.2	72.45
KRH29108	Soybean	cytosol	64.69	64.86
TraesCS1D01G157500.1	Wheat	cytosol	63.14	62.82
TraesCS1A01G160300.1	Wheat	cytosol	62.63	62.31
TraesCS1B01G176300.1	Wheat	cytosol	62.37	62.05
Os10t0484800-01	Rice	cytosol	62.11	61.95
Zm00001d032662_P001	Maize	plastid	61.86	61.54
KRH24136	Soybean	cytosol	57.99	59.68
Zm00001d013991_P001	Maize	mitochondrion	60.82	56.06
HORVU1Hr1G042510.2	Barley	cytosol	62.11	49.59
EER91459	Sorghum	cytosol	61.08	48.87
KRH42776	Soybean	cytosol	28.87	43.92
KRG94730	Soybean	cytosol	40.21	39.9
KRH42758	Soybean	cytosol	39.69	39.69
KRH37579	Soybean	cytosol	39.69	39.69
KRH75544	Soybean	cytosol	39.69	39.69
KRH71115	Soybean	cytosol	39.69	39.69
KRH58872	Soybean	cytosol	39.69	39.69
KRH42783	Soybean	cytosol	39.69	39.69
KRH42780	Soybean	cytosol	39.69	39.69
KRH42778	Soybean	cytosol	39.69	39.69
KRH42775	Soybean	cytosol	39.69	39.69
KRH42759	Soybean	cytosol	39.69	39.69
KRH42757	Soybean	cytosol	39.69	39.69
KRH27737	Soybean	cytosol	39.69	39.59
KRH42760	Soybean	cytosol	39.43	39.43
KRH77699	Soybean	endoplasmic reticulum	39.43	39.33
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	79.12	34.34
KRH18039	Soybean	cytosol	27.58	33.65

Protein Annotations

EntrezGene:100793478	MapMan:21.8.1.4	Gene3D:3.40.47.10	EMBL:ACUP02000180	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N
EnsemblPlantsGene:GLYMA_01G073600	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	UniProt:I1J6D7	InterPro:IPR016039	EnsemblPlants:KRH75257
ProteinID:KRH75257	ProteinID:KRH75257.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877
PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0002336FB2	:

Description

hypothetical protein

Coordinates

chr1:-:14209213..14211340

Molecular Weight (calculated)

42797.7 Da

IEP (calculated)

5.913

GRAVY (calculated)

-0.179

Length

388 amino acids

Sequence
(BLAST)

001: MPQGDSNGSS KQLAAVTRRV PTPGKATILA IGKAFPSQII PQECLVEGYI RDTKCEDAYI KEKLERLCKN TTVKTRYTVM SKEILDKYPE LATEGSPTIR
101: QKLEIANPAV VEMATKASLC CIKEWGRPAQ DITHIVYVSS SEIRLPGGDL YLANELGLRS DVSRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGANPVMGQ ESPFMELSYA VQKFLLDTHN VIDGRLSEEG INFKLGRDLP QKIEDNIEEF CRKLMAKSSA
301: KDFNDLFWAV HPGGPAILNR LESTLKLSND KLECSRKALM DYGNVSSNTI FYVMEYMREY LKEDGEEWGL GLAFGPGITF EGILLRSL

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.