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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 5
  • vacuole 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92978
KRH05848
KRH05851
KRH08080
KRH15169
KRH16579
KRH18787
KRH53203
KRH69784
KRH69787
KRH71611

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13930.1 KRH08080 AT3G51240.1 10536025
AT5G13930.1 KRH69784 AT3G51240.1 10536025
AT5G13930.1 KRH69787 AT3G51240.1 10536025
AT5G13930.1 KRG92978 AT3G55120.1 10536025
AT5G13930.1 KRH16579 AT5G08640.1 18467451
AT5G13930.1 KRH18787 AT5G08640.1 18467451
AT5G13930.1 KRH53203 AT5G08640.1 18467451
AT5G13930.1 KRH16579 AT5G08640.1 21669202
AT5G13930.1 KRH18787 AT5G08640.1 21669202
AT5G13930.1 KRH53203 AT5G08640.1 21669202
AT5G13930.1 KRH05848 AT5G42800.1 10536025
AT5G13930.1 KRH05851 AT5G42800.1 10536025
AT5G13930.1 KRH15169 AT5G42800.1 10536025
AT5G13930.1 KRH71611 AT5G42800.1 10536025
AT5G13930.1 KRH05848 AT5G42800.1 21669202
AT5G13930.1 KRH05851 AT5G42800.1 21669202
AT5G13930.1 KRH15169 AT5G42800.1 21669202
AT5G13930.1 KRH71611 AT5G42800.1 21669202
AT5G13930.1 KRH16579 AT5G63590.1 18467451
AT5G13930.1 KRH18787 AT5G63590.1 18467451
AT5G13930.1 KRH53203 AT5G63590.1 18467451
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27737 Soybean cytosol 98.71 98.71
KRH58872 Soybean cytosol 90.23 90.46
KRH75544 Soybean cytosol 89.97 90.21
KRH42757 Soybean cytosol 89.97 90.21
KRH42783 Soybean cytosol 89.97 90.21
KRH42758 Soybean cytosol 89.97 90.21
KRH42759 Soybean cytosol 89.97 90.21
KRH42775 Soybean cytosol 89.97 90.21
KRH42780 Soybean cytosol 89.72 89.95
KRH37579 Soybean cytosol 89.72 89.95
KRH42778 Soybean cytosol 89.72 89.95
KRH42776 Soybean cytosol 58.87 89.8
KRH71115 Soybean cytosol 89.46 89.69
KRH42760 Soybean cytosol 89.2 89.43
GSMUA_Achr6P16370_001 Banana cytosol, mitochondrion, plastid 68.38 84.98
CDX78547 Canola cytosol 84.06 82.99
KRG94730 Soybean cytosol 83.29 82.86
CDX70528 Canola cytosol 84.06 82.58
AT5G13930.1 Thale cress cytosol 83.8 82.53
CDX69618 Canola cytosol 83.8 82.53
GSMUA_Achr10P... Banana cytosol 68.64 82.41
CDY09836 Canola cytosol 83.55 82.28
Bra006224.1-P Field mustard cytosol 83.55 82.07
CDX91090 Canola cytosol 83.55 82.07
Bra008792.1-P Field mustard cytosol 83.29 82.03
GSMUA_Achr6P10910_001 Banana cytosol, mitochondrion 69.15 82.01
Bra023441.1-P Field mustard cytosol 82.52 81.47
EES09858 Sorghum cytosol 82.01 79.55
Bra020688.1-P Field mustard cytosol 80.46 79.44
TraesCS2D01G027700.1 Wheat cytosol 80.21 79.19
CDY51056 Canola cytosol 80.21 79.19
TraesCS2A01G035300.1 Wheat cytosol 80.21 79.19
TraesCS2A01G025600.1 Wheat cytosol 80.21 79.19
EES09865 Sorghum cytosol 81.49 79.05
EES09864 Sorghum cytosol 81.23 79.0
TraesCS2D01G027900.2 Wheat cytosol 79.95 78.93
Os11t0530600-01 Rice cytosol, mitochondrion, plasma membrane 80.72 78.89
TraesCS2B01G558400.1 Wheat cytosol 80.72 78.89
EES09862 Sorghum cytosol 81.23 78.8
KXG29016 Sorghum cytosol 81.23 78.8
EES09860 Sorghum cytosol 81.23 78.8
EES09859 Sorghum cytosol 81.23 78.8
EES08604 Sorghum cytosol 81.23 78.8
TraesCS2A01G025500.1 Wheat cytosol 79.69 78.68
HORVU2Hr1G116390.2 Barley cytosol 80.46 78.64
TraesCS2A01G527700.2 Wheat cytosol 80.46 78.64
Zm00001d052673_P001 Maize cytosol 80.72 78.5
HORVU2Hr1G005220.3 Barley cytosol 79.69 78.48
TraesCS2A01G025700.1 Wheat cytosol, golgi 79.43 78.43
TraesCS2B01G038700.1 Wheat cytosol 79.43 78.43
TraesCS2B01G048400.1 Wheat cytosol 79.43 78.43
EES09863 Sorghum cytosol 80.72 78.3
TraesCS2D01G034500.1 Wheat cytosol 79.43 78.23
CDY05664 Canola cytosol 79.18 78.17
Bra036307.1-P Field mustard cytosol 78.66 77.86
Zm00001d007403_P001 Maize cytosol 80.21 77.81
TraesCS2B01G038600.1 Wheat cytosol 72.24 77.62
TraesCS2D01G027800.1 Wheat cytosol 41.9 77.25
TraesCS2B01G613100.1 Wheat cytosol 77.64 75.69
TraesCS5D01G488600.1 Wheat cytosol 76.35 75.19
TraesCS5D01G488700.1 Wheat cytosol 76.35 75.19
CDY07114 Canola cytosol 76.86 72.93
TraesCS1B01G041000.1 Wheat cytosol 73.01 71.9
GSMUA_Achr10P... Banana mitochondrion 63.24 71.72
HORVU2Hr1G004170.4 Barley plastid 79.69 71.59
EES14634 Sorghum cytosol 72.75 71.11
TraesCS1A01G032100.1 Wheat cytosol 71.98 70.89
TraesCS1B01G040300.1 Wheat cytosol, mitochondrion 71.98 70.89
TraesCS1A01G032300.1 Wheat cytosol 72.49 70.85
TraesCS1B01G040000.1 Wheat cytosol, mitochondrion 71.72 70.63
TraesCS1D01G033600.1 Wheat cytosol 71.98 70.18
TraesCS1B01G040100.1 Wheat cytosol 71.21 70.13
HORVU1Hr1G004830.1 Barley cytosol 71.47 70.03
TraesCS1B01G040500.1 Wheat cytosol 71.72 69.92
TraesCS1B01G040200.1 Wheat cytosol, mitochondrion 72.24 69.9
TraesCS1D01G033800.1 Wheat cytosol 71.47 69.85
HORVU1Hr1G089540.1 Barley mitochondrion 71.21 69.42
Os07t0214900-00 Rice cytosol 70.69 68.24
TraesCS2D01G530600.1 Wheat cytosol, plastid 80.46 65.48
KRH18039 Soybean cytosol 53.47 65.41
CDY05666 Canola mitochondrion 69.92 65.07
KRH29108 Soybean cytosol 41.9 42.12
KRH75257 Soybean cytosol 39.33 39.43
KRH24136 Soybean cytosol 35.73 36.87
Protein Annotations
KEGG:00941+2.3.1.74EntrezGene:100782897Gene3D:3.40.47.10MapMan:9.2.2.1.1.1UniProt:A0A0R0LKP7ProteinID:AAA33950.1
InterPro:Chalcone/stilbene_synth_CInterPro:Chalcone/stilbene_synthase_ASInterPro:Chalcone/stilbene_synthase_NEnsemblPlantsGene:GLYMA_01G228700GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009813GO:GO:0016210GO:GO:0016740
GO:GO:0016746GO:GO:0016747InterPro:IPR016039EnsemblPlants:KRH77699ProteinID:KRH77699ProteinID:KRH77699.1
UniProt:P30081PFAM:PF00195PFAM:PF02797PIRSF:PIRSF000451ScanProsite:PS00441PANTHER:PTHR11877
PANTHER:PTHR11877:SF43MetaCyc:PWY-5135MetaCyc:PWY-6316MetaCyc:PWY-6787MetaCyc:PWY-7397InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901InterPro:Thiolase-likeUniParc:UPI0000127936:::
Description
CHS7hypothetical protein
Coordinates
chr1:+:55658781..55660721
Molecular Weight (calculated)
42876.8 Da
IEP (calculated)
6.320
GRAVY (calculated)
-0.143
Length
389 amino acids
Sequence
(BLAST)
001: MVSVAEIRQA QRAEGPATIL AIGTANPPNR VDQSTYPDYY FRITNSDHMT ELKEKFQRMC DKSMIKTRYM YLNEEILKEN PNMCAYMAPS LDARQDMVVV
101: EVPKLGKEAA VKAIKEWGQP KSKITHLIFC TTSGVDMPGA DYQLTKQLGL RPYVKRYMMY QQGCFAGGTV LRLAKDLAEN NKGARVLVVC SEITAVTFRG
201: PSDTHLDSLV GQALFGDGAA AVIVGSDPIP QVEKPLYELV WTAQTIAPDS EGAIDGHLRE VGLTFHLLKD VPGIVSKNID KALFEAFNPL NISDYNSIFW
301: IAHPGGPAIL DQVEQKLGLK PEKMKATRDV LSEYGNMSSA CVLFILDEMR RKSAENGHKT TGEGLEWGVL FGFGPGLTIE TVVLHSVAI
Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
Arabidopsis Description
CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.