Factsheet for GSMUA_Achr6P10910_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P02770_001
GSMUA_Achr3P07030_001
GSMUA_Achr4P16830_001
GSMUA_Achr4P24540_001
GSMUA_Achr7P16780_001
GSMUA_Achr8P23330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	GSMUA_Achr2P02770_001	AT3G51240.1	10536025
AT5G13930.1	GSMUA_Achr7P16780_001	AT3G51240.1	10536025
AT5G13930.1	GSMUA_Achr4P16830_001	AT3G55120.1	10536025
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr4P24540_001	AT5G42800.1	10536025
AT5G13930.1	GSMUA_Achr4P24540_001	AT5G42800.1	21669202
AT5G13930.1	GSMUA_Achr10P...	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	87.2	88.27
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	79.57	83.39
GSMUA_Achr10P...	Banana	mitochondrion	79.88	76.38
VIT_14s0068g00920.t01	Wine grape	cytosol	86.59	72.26
TraesCS2B01G558400.1	Wheat	cytosol	85.67	70.6
EES09858	Sorghum	cytosol	86.28	70.57
CDX78547	Canola	cytosol	84.76	70.56
TraesCS2A01G035300.1	Wheat	cytosol	84.76	70.56
TraesCS2D01G027700.1	Wheat	cytosol	84.76	70.56
VIT_14s0068g00930.t01	Wine grape	cytosol	84.45	70.48
PGSC0003DMT400076178	Potato	cytosol	83.54	70.44
Solyc09g091510.2.1	Tomato	cytosol, extracellular	83.54	70.44
HORVU2Hr1G116390.2	Barley	cytosol	85.37	70.35
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	85.37	70.35
TraesCS2A01G527700.2	Wheat	cytosol	85.37	70.35
EES08604	Sorghum	cytosol	85.98	70.32
EES09859	Sorghum	cytosol	85.98	70.32
EES09860	Sorghum	cytosol	85.98	70.32
EES09865	Sorghum	cytosol	85.98	70.32
KXG29016	Sorghum	cytosol	85.98	70.32
TraesCS2A01G025500.1	Wheat	cytosol	84.45	70.3
CDX70528	Canola	cytosol	84.76	70.2
CDX69618	Canola	cytosol	84.45	70.13
KRH71115	Soybean	cytosol	82.93	70.1
KRH75544	Soybean	cytosol	82.93	70.1
TraesCS2A01G025600.1	Wheat	cytosol	84.15	70.05
TraesCS2A01G025700.1	Wheat	cytosol, golgi	84.15	70.05
EES09864	Sorghum	cytosol	85.37	70.0
Bra008792.1-P	Field mustard	cytosol	84.15	69.87
HORVU2Hr1G005220.3	Barley	cytosol	84.15	69.87
KRH37579	Soybean	cytosol	82.62	69.85
KRH42758	Soybean	cytosol	82.62	69.85
KRH42759	Soybean	cytosol	82.62	69.85
KRH42775	Soybean	cytosol	82.62	69.85
KRH42783	Soybean	cytosol	82.62	69.85
KRH58872	Soybean	cytosol	82.62	69.85
EES09862	Sorghum	cytosol	85.37	69.83
EES09863	Sorghum	cytosol	85.37	69.83
TraesCS2B01G038700.1	Wheat	cytosol	83.84	69.8
TraesCS2B01G048400.1	Wheat	cytosol	83.84	69.8
TraesCS2D01G027900.2	Wheat	cytosol	83.84	69.8
Zm00001d052673_P001	Maize	cytosol	85.06	69.75
Bra006224.1-P	Field mustard	cytosol	84.15	69.7
VIT_05s0136g00260.t01	Wine grape	cytosol	82.62	69.67
CDY09836	Canola	cytosol	83.84	69.62
TraesCS2D01G034500.1	Wheat	cytosol	83.84	69.62
KRH42757	Soybean	cytosol	82.32	69.59
KRH42778	Soybean	cytosol	82.32	69.59
KRH42780	Soybean	cytosol	82.32	69.59
CDX91090	Canola	cytosol	83.84	69.44
AT5G13930.1	Thale cress	cytosol	83.54	69.37
KRH42760	Soybean	cytosol	82.01	69.33
Zm00001d007403_P001	Maize	cytosol	84.76	69.33
TraesCS2D01G027800.1	Wheat	cytosol	44.51	69.19
KRH77699	Soybean	endoplasmic reticulum	82.01	69.15
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	82.01	69.15
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	82.01	69.15
Bra023441.1-P	Field mustard	cytosol	82.93	69.04
KRH27737	Soybean	cytosol	81.4	68.64
KRG94730	Soybean	cytosol	81.4	68.29
TraesCS2B01G613100.1	Wheat	cytosol	82.62	67.92
CDY51056	Canola	cytosol	81.1	67.51
TraesCS2B01G038600.1	Wheat	cytosol	74.39	67.4
CDY05664	Canola	cytosol	80.79	67.26
Bra020688.1-P	Field mustard	cytosol	80.18	66.75
Bra036307.1-P	Field mustard	cytosol	79.57	66.41
TraesCS5D01G488600.1	Wheat	cytosol	79.27	65.82
TraesCS5D01G488700.1	Wheat	cytosol	79.27	65.82
GSMUA_Achr6P08170_001	Banana	cytosol	73.78	65.76
EES14634	Sorghum	cytosol	78.66	64.82
KRH42776	Soybean	cytosol	50.0	64.31
TraesCS1A01G032100.1	Wheat	cytosol	77.44	64.3
TraesCS1B01G041000.1	Wheat	cytosol	77.44	64.3
PGSC0003DMT400076179	Potato	cytosol	74.09	64.12
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	77.13	64.05
HORVU2Hr1G004170.4	Barley	plastid	84.15	63.74
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	76.52	63.54
TraesCS1A01G032300.1	Wheat	cytosol	76.83	63.32
TraesCS1B01G040100.1	Wheat	cytosol	76.22	63.29
TraesCS1B01G040500.1	Wheat	cytosol	76.83	63.16
TraesCS1D01G033800.1	Wheat	cytosol	76.52	63.07
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	77.13	62.94
TraesCS1D01G033600.1	Wheat	cytosol	76.52	62.91
HORVU1Hr1G004830.1	Barley	cytosol	75.91	62.72
CDY07114	Canola	cytosol	77.74	62.2
HORVU1Hr1G089540.1	Barley	mitochondrion	75.3	61.9
Os07t0214900-00	Rice	cytosol	75.3	61.29
GSMUA_Achr6P08180_001	Banana	cytosol	74.7	61.25
TraesCS2D01G530600.1	Wheat	cytosol, plastid	85.37	58.58
CDY05666	Canola	mitochondrion	69.82	54.78
GSMUA_Achr11P...	Banana	mitochondrion	59.45	54.17
GSMUA_Achr6P08990_001	Banana	mitochondrion	56.1	53.96
GSMUA_Achr2P22970_001	Banana	mitochondrion	59.15	53.89
GSMUA_Achr10P...	Banana	mitochondrion	59.15	53.44
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	53.35	53.35
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	59.45	53.28
GSMUA_Achr10P...	Banana	mitochondrion	59.45	53.28
GSMUA_Achr3P22530_001	Banana	cytosol	46.95	49.52
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	54.88	49.05
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	59.15	33.86
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	36.89	16.09

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr6G10910_001	EnsemblPlants:GSMUA_Achr6P10910_001	EnsemblPlants:GSMUA_Achr6T10910_001	InterPro:IPR016039	UniProt:M0T5Z0	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI0002958113	:	:	:	:

Description

Chalcone synthase 4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10910_001]

Coordinates

chr6:+:7269753..7271431

Molecular Weight (calculated)

35817.6 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.027

Length

328 amino acids

Sequence
(BLAST)

001: MADLQEIRRS QRAGGPAAVL AIGTATPANV LYQADYPDYY FRITKSDHLT ELKEKFKRMC DKSMIRKRYM HLNEEILKEN PNICAYMAPS LDARQDIVVV
101: EIPKLGKEAA VKAIKEWGQP KSKITHLVFC TTSGQGCFAG GTVLRLAKDL AENNRGARVL VVCSEITAVT FRGPSESHLD SLVGQALFGD GAAAIIVGLT
201: FHLLKDVPGL ISKNIEKSLV EAFKPLGIDD WNSIFWIAHP GGPAILDQVE AKIGLQKEKM QATRRVLSEY GNMSSACVLF ILDEMRNRSA ADGKATTGEG
301: LKWGVLFGFG PGLTVETVVL HSMPIVAN

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.