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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 6
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400009175
PGSC0003DMT400009287
PGSC0003DMT400036565

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13930.1 PGSC0003DMT400009175 AT3G51240.1 10536025
AT5G13930.1 PGSC0003DMT400036565 AT5G08640.1 18467451
AT5G13930.1 PGSC0003DMT400036565 AT5G08640.1 21669202
AT5G13930.1 PGSC0003DMT400009287 AT5G42800.1 10536025
AT5G13930.1 PGSC0003DMT400009287 AT5G42800.1 21669202
AT5G13930.1 PGSC0003DMT400036565 AT5G63590.1 18467451
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g091510.2.1 Tomato cytosol, extracellular 90.77 88.43
PGSC0003DMT400076178 Potato cytosol 90.24 87.92
PGSC0003DMT400049165 Potato cytosol, mitochondrion 84.7 82.52
VIT_14s0068g00930.t01 Wine grape cytosol 82.06 79.13
VIT_14s0068g00920.t01 Wine grape cytosol 82.06 79.13
KRG94730 Soybean cytosol 79.16 76.73
GSMUA_Achr6P16370_001 Banana cytosol, mitochondrion, plastid 62.27 75.4
TraesCS2D01G027800.1 Wheat cytosol 41.69 74.88
CDX78547 Canola cytosol 77.84 74.87
EES09858 Sorghum cytosol 79.16 74.81
CDX70528 Canola cytosol 77.84 74.49
CDY09836 Canola cytosol 77.57 74.43
TraesCS2A01G035300.1 Wheat cytosol 77.31 74.37
TraesCS2A01G025600.1 Wheat cytosol 77.31 74.37
TraesCS2A01G025700.1 Wheat cytosol, golgi 77.31 74.37
TraesCS2B01G038700.1 Wheat cytosol 77.31 74.37
TraesCS2D01G027700.1 Wheat cytosol 77.31 74.37
EES09865 Sorghum cytosol 78.63 74.31
EES09864 Sorghum cytosol 78.36 74.25
Os11t0530600-01 Rice cytosol, mitochondrion, plasma membrane 77.84 74.12
GSMUA_Achr6P10910_001 Banana cytosol, mitochondrion 64.12 74.09
EES08604 Sorghum cytosol 78.36 74.06
KXG29016 Sorghum cytosol 78.36 74.06
EES09863 Sorghum cytosol 78.36 74.06
EES09860 Sorghum cytosol 78.36 74.06
EES09859 Sorghum cytosol 78.36 74.06
Zm00001d052673_P001 Maize cytosol 78.1 74.0
CDX69618 Canola cytosol 77.04 73.92
TraesCS2D01G027900.2 Wheat cytosol 76.78 73.86
Bra006224.1-P Field mustard cytosol 77.04 73.74
HORVU2Hr1G005220.3 Barley cytosol 76.78 73.67
AT5G13930.1 Thale cress cytosol 76.78 73.67
HORVU2Hr1G116390.2 Barley cytosol 77.31 73.62
TraesCS2A01G527700.2 Wheat cytosol 77.31 73.62
TraesCS2B01G048400.1 Wheat cytosol 76.52 73.6
TraesCS2A01G025500.1 Wheat cytosol 76.52 73.6
EES09862 Sorghum cytosol 77.84 73.57
CDX91090 Canola cytosol 76.78 73.48
Bra008792.1-P Field mustard cytosol 76.52 73.42
TraesCS2D01G034500.1 Wheat cytosol 76.52 73.42
TraesCS2B01G558400.1 Wheat cytosol 77.04 73.37
Bra023441.1-P Field mustard cytosol 76.25 73.35
GSMUA_Achr10P... Banana cytosol 62.53 73.15
Bra020688.1-P Field mustard cytosol 75.99 73.1
CDY51056 Canola cytosol 75.73 72.84
Zm00001d007403_P001 Maize cytosol 77.04 72.82
CDY05664 Canola cytosol 74.41 71.57
TraesCS2B01G038600.1 Wheat cytosol 68.34 71.55
Bra036307.1-P Field mustard cytosol 74.14 71.5
TraesCS2B01G613100.1 Wheat cytosol 75.2 71.43
PGSC0003DMT400022254 Potato cytosol 72.56 70.51
PGSC0003DMT400043447 Potato cytosol 72.3 70.26
TraesCS1B01G040300.1 Wheat cytosol, mitochondrion 72.3 69.37
EES14634 Sorghum cytosol 72.56 69.1
TraesCS1A01G032100.1 Wheat cytosol 71.77 68.86
TraesCS1B01G041000.1 Wheat cytosol 71.77 68.86
TraesCS1B01G040000.1 Wheat cytosol, mitochondrion 71.77 68.86
TraesCS5D01G488600.1 Wheat cytosol 71.77 68.86
TraesCS5D01G488700.1 Wheat cytosol 71.77 68.86
TraesCS1B01G040100.1 Wheat cytosol 71.24 68.35
TraesCS1B01G040200.1 Wheat cytosol, mitochondrion 72.3 68.16
TraesCS1D01G033600.1 Wheat cytosol 71.5 67.92
PGSC0003DMT400022255 Potato cytosol 59.63 67.87
PGSC0003DMT400022258 Potato cytosol 70.18 67.86
TraesCS1A01G032300.1 Wheat cytosol 71.24 67.84
HORVU1Hr1G089540.1 Barley mitochondrion 71.24 67.67
TraesCS1B01G040500.1 Wheat cytosol 71.24 67.67
HORVU2Hr1G004170.4 Barley plastid 77.31 67.67
TraesCS1D01G033800.1 Wheat cytosol 70.98 67.59
HORVU1Hr1G004830.1 Barley cytosol 70.18 67.0
CDY07114 Canola cytosol 72.3 66.83
PGSC0003DMT400043464 Potato cytosol 70.45 66.09
GSMUA_Achr10P... Banana mitochondrion 58.84 65.01
PGSC0003DMT400069814 Potato cytosol 67.02 64.8
Os07t0214900-00 Rice cytosol 68.34 64.27
CDY05666 Canola mitochondrion 68.07 61.72
TraesCS2D01G530600.1 Wheat cytosol, plastid 77.31 61.3
PGSC0003DMT400004133 Potato cytosol 43.27 43.16
PGSC0003DMT400095725 Potato plastid 40.37 38.64
Protein Annotations
EntrezGene:102580017Gene3D:3.40.47.10MapMan:9.2.2.1.1.1InterPro:Chalcone/stilbene_synth_CInterPro:Chalcone/stilbene_synthase_NGO:GO:0003674
GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0016740GO:GO:0016746
GO:GO:0016747InterPro:IPR016039UniProt:M1CWA8PFAM:PF00195PFAM:PF02797EnsemblPlantsGene:PGSC0003DMG400029621
PGSC:PGSC0003DMG400029621EnsemblPlants:PGSC0003DMT400076179PIRSF:PIRSF000451PANTHER:PTHR11877PANTHER:PTHR11877:SF43InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901InterPro:Thiolase-likeUniParc:UPI0002967B10RefSeq:XP_015170267.1SEG:seg:
Description
Chalcone synthase 1B [Source:PGSC_GENE;Acc:PGSC0003DMG400029621]
Coordinates
chr9:+:58361561..58364070
Molecular Weight (calculated)
41790.0 Da
IEP (calculated)
8.373
GRAVY (calculated)
-0.133
Length
379 amino acids
Sequence
(BLAST)
001: MVTVEEYRKA QRAKGPATVM AIGTSTPFNC VDQSTYPDYY FRITNSEHKT ELKEKFKRMC DKSMIKKRYM HLTEEILKKN PNMCAYMSPS LDARQDIAIV
101: EVPKLGKEAA QKAIKEWGQP KSKITHLVFC TSSGVDMPGC DYQLAKLLGL CPSVKRLMIY QQDCYAGGTL LRLAKDMAEN NKGARVLVVS SEITVVKFRG
201: PSESHIDNLL GQALFGDGVA AVIIGSDPNL GVERPLFKLV SAAQTLVPDS EGAIYGHLRE VGHIFHLLKD VPGLISKNIE KSLLDAFQPL GISDWNSLFW
301: ITHPGGPAML DQVELKLGLK PEKLRVSREV LSNYGNMSSA CVLFILDEMR KASTKEGLGT TGEGLEWGVL FGFGPGLTI
Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
Arabidopsis Description
CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.