Factsheet for PGSC0003DMT400043464

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098090.1.1	Tomato	cytosol	83.42	76.94
PGSC0003DMT400022254	Potato	cytosol	74.26	76.92
PGSC0003DMT400043447	Potato	cytosol	73.27	75.9
PGSC0003DMT400022255	Potato	cytosol	61.14	74.17
PGSC0003DMT400022258	Potato	cytosol	71.78	73.98
PGSC0003DMT400076178	Potato	cytosol	70.05	72.75
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	69.8	72.49
PGSC0003DMT400076179	Potato	cytosol	66.09	70.45
PGSC0003DMT400069814	Potato	cytosol	57.43	59.18
PGSC0003DMT400004133	Potato	cytosol	39.11	41.58
PGSC0003DMT400095725	Potato	plastid	36.14	36.87

Protein Annotations

EntrezGene:102605087	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	UniProt:M1BEN5	PFAM:PF00195	PFAM:PF02797	EnsemblPlantsGene:PGSC0003DMG400016873
PGSC:PGSC0003DMG400016873	EnsemblPlants:PGSC0003DMT400043464	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF43	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI00029629E2	RefSeq:XP_006349976.1	SEG:seg	:

Description

Chalcone synthase J [Source:PGSC_GENE;Acc:PGSC0003DMG400016873]

Coordinates

chr12:+:58954773..58956693

Molecular Weight (calculated)

44259.9 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.001

Length

404 amino acids

Sequence
(BLAST)

001: MIKSLCSNLP PSAKIVTIEE LSRAQRAEGP ANVLAIGTAN PSNCIDQSTY PDYFFRITNS EHKSELKRKF KQMCAKSMIK KRYSHLTEEI LKKNPNICKY
101: NAPSLDARQE ITIIEVPKLG QEAAQKAINE WGQPISKITH LIFCTTSDVN MPGADYQLTK LLGLDSSVKR FMLYQQGCSG GGTALRLAKD LAENNKGARV
201: LVVCSELINL MGFQGPSDTK LSVLVGQALF SDGASAVIIG SNPIISIERP LFELVSTIQT LIPDSGYAGY SNLSEAGLIT YIHKDIPMLV AKNIEKILVE
301: VFQPLGISNW DSIFWVAHPG GRAILDQIEL KLGLKSKKLE TTRHVLSDYG NMSSATVLFV LDEMRKTSIK EGLCSTGEGL EWGVLCCFGP GLTIETIVLR
401: SISI

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.