Factsheet for PGSC0003DMT400022258

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022254	Potato	cytosol	80.61	81.03
PGSC0003DMT400022255	Potato	cytosol	68.11	80.18
PGSC0003DMT400043447	Potato	cytosol	78.83	79.23
PGSC0003DMT400043464	Potato	cytosol	73.98	71.78
PGSC0003DMT400076178	Potato	cytosol	70.66	71.21
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	70.41	70.95
PGSC0003DMT400076179	Potato	cytosol	67.86	70.18
PGSC0003DMT400069814	Potato	cytosol	59.44	59.44
PGSC0003DMT400004133	Potato	cytosol	41.07	42.37
PGSC0003DMT400095725	Potato	plastid	39.29	38.89

Protein Annotations

EntrezGene:102595874	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	UniProt:M1AGF9	PFAM:PF00195	PFAM:PF02797	EnsemblPlantsGene:PGSC0003DMG400008634
PGSC:PGSC0003DMG400008634	EnsemblPlants:PGSC0003DMT400022258	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF43	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0002960013	RefSeq:XP_006367319.1	SEG:seg	:

Description

Chalcone synthase J [Source:PGSC_GENE;Acc:PGSC0003DMG400008634]

Coordinates

chr12:+:58746401..58747957

Molecular Weight (calculated)

42986.0 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.018

Length

392 amino acids

Sequence
(BLAST)

001: MATVNEIRQA QRTVGPATVL AIGTANPLNC FDQSTYPDYY FRVTNSDDKI ELKQKFKRMC DGSMIKKRYS YLTEEILKKN PNFCEYKAPS FDARQEIAIV
101: EVPKLGKEAA EKAINEWGQS KSMITHLVFC TTTGVDIPGA DYQLTQLLGL DLTVKRFMMY QQGCSGGATT LRLAKDLAEN NKGARVLVVC SELINFLDFH
201: APSETETEVL VGQALFSDGA SAVIIGSDPI PTVERPLFEL VFTTQTLLPD SEYEITAKLG EAGLIAKIHK NTPMLISKNI ERILGEAFQP LGISNWNSIF
301: WVAHPGGRAI LDQIELNLSL TPEKLKASRN VLSNYGNMAS ASVLFVLDEM RKISIEMGLG TTGGGLDWGV LCGFGPGLTI EAVVLRSIPI ST

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.