Factsheet for PGSC0003DMT400022254

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043447	Potato	cytosol	94.36	94.36
PGSC0003DMT400022255	Potato	cytosol	70.0	81.98
PGSC0003DMT400022258	Potato	cytosol	81.03	80.61
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	74.62	74.81
PGSC0003DMT400076178	Potato	cytosol	74.36	74.55
PGSC0003DMT400043464	Potato	cytosol	76.92	74.26
PGSC0003DMT400076179	Potato	cytosol	70.51	72.56
PGSC0003DMT400069814	Potato	cytosol	61.79	61.48
PGSC0003DMT400004133	Potato	cytosol	41.03	42.11
PGSC0003DMT400095725	Potato	plastid	40.51	39.9

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:102595537	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS
InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1AGF7	PFAM:PF00195
PFAM:PF02797	EnsemblPlantsGene:PGSC0003DMG400008632	PGSC:PGSC0003DMG400008632	EnsemblPlants:PGSC0003DMT400022254	PIRSF:PIRSF000451	ScanProsite:PS00441
PANTHER:PTHR11877	PANTHER:PTHR11877:SF43	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0002957F6A
RefSeq:XP_006367318.1	SEG:seg	:	:	:	:

Description

Chalcone synthase J [Source:PGSC_GENE;Acc:PGSC0003DMG400008632]

Coordinates

chr12:+:58758677..58761269

Molecular Weight (calculated)

43189.5 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.037

Length

390 amino acids

Sequence
(BLAST)

001: MVTVDEIRRT QRAMGPATVL AIGTANPSNC YDQSIYPDYF FRVTGSEHKI ELKNKFKRMC DKSMIKKRYF YLTEEILKKN PNICEYNAPS FNIRQEITIA
101: EVPKLGKEAA EKAINEWGQS KSKITHLVFC TTSGVDLPGA DYQLTKFLGL EPSVKRFMMY QQGCYGGGTA LRLAKDLAEN NKVARVLVVC SELANLVSFR
201: NPNETELEVL VGQALFSDGA SAAIIGSDPI MNVEKPLFEL VFATQTLLPD SEYAITAYLT EAGLKVQIHK DTPMLISKNI ERILVEAFQP LDISDWNSIF
301: WVSHPGGPAI LDQIELKLGL KPEKLKATRN VLSDYGNMVS ACVLFVLDEM RKSSIKAGLG TTGEGLEWGV LLGFGPGLTI EALVLRSISI

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.