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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 cytosol: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400009175
PGSC0003DMT400009287
PGSC0003DMT400036565

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13930.1 PGSC0003DMT400009175 AT3G51240.1 10536025
AT5G13930.1 PGSC0003DMT400036565 AT5G08640.1 18467451
AT5G13930.1 PGSC0003DMT400036565 AT5G08640.1 21669202
AT5G13930.1 PGSC0003DMT400009287 AT5G42800.1 10536025
AT5G13930.1 PGSC0003DMT400009287 AT5G42800.1 21669202
AT5G13930.1 PGSC0003DMT400036565 AT5G63590.1 18467451
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g091510.2.1 Tomato cytosol, extracellular 99.23 99.23
PGSC0003DMT400049165 Potato cytosol, mitochondrion 91.52 91.52
PGSC0003DMT400076179 Potato cytosol 87.92 90.24
VIT_14s0068g00920.t01 Wine grape cytosol 89.46 88.55
VIT_14s0068g00930.t01 Wine grape cytosol 88.69 87.79
KRG94730 Soybean cytosol 86.38 85.93
GSMUA_Achr6P16370_001 Banana cytosol, mitochondrion, plastid 68.89 85.62
CDX78547 Canola cytosol 85.6 84.52
CDX70528 Canola cytosol 85.6 84.09
CDX69618 Canola cytosol 85.09 83.8
CDY09836 Canola cytosol 84.83 83.54
GSMUA_Achr6P10910_001 Banana cytosol, mitochondrion 70.44 83.54
Bra006224.1-P Field mustard cytosol 84.83 83.33
EES09858 Sorghum cytosol 85.86 83.29
AT5G13930.1 Thale cress cytosol 84.58 83.29
CDX91090 Canola cytosol 84.58 83.08
Bra008792.1-P Field mustard cytosol 84.32 83.04
TraesCS2D01G027700.1 Wheat cytosol 84.06 82.99
EES09865 Sorghum cytosol 85.35 82.79
EES09864 Sorghum cytosol 85.09 82.75
KXG29016 Sorghum cytosol 85.09 82.54
EES09860 Sorghum cytosol 85.09 82.54
EES09863 Sorghum cytosol 85.09 82.54
EES09859 Sorghum cytosol 85.09 82.54
EES08604 Sorghum cytosol 85.09 82.54
TraesCS2A01G035300.1 Wheat cytosol 83.55 82.49
TraesCS2A01G025600.1 Wheat cytosol 83.55 82.49
Bra023441.1-P Field mustard cytosol 83.55 82.49
Os11t0530600-01 Rice cytosol, mitochondrion, plasma membrane 84.32 82.41
GSMUA_Achr10P... Banana cytosol 68.64 82.41
TraesCS2B01G038700.1 Wheat cytosol 83.29 82.23
TraesCS2A01G025700.1 Wheat cytosol, golgi 83.29 82.23
TraesCS2D01G027900.2 Wheat cytosol 83.29 82.23
TraesCS2A01G527700.2 Wheat cytosol 84.06 82.16
TraesCS2B01G558400.1 Wheat cytosol 84.06 82.16
EES09862 Sorghum cytosol 84.58 82.04
Zm00001d052673_P001 Maize cytosol 84.32 82.0
TraesCS2D01G027800.1 Wheat cytosol 44.47 81.99
HORVU2Hr1G116390.2 Barley cytosol 83.8 81.91
HORVU2Hr1G005220.3 Barley cytosol 83.03 81.77
TraesCS2B01G048400.1 Wheat cytosol 82.78 81.73
TraesCS2A01G025500.1 Wheat cytosol 82.78 81.73
TraesCS2D01G034500.1 Wheat cytosol 82.78 81.52
Zm00001d007403_P001 Maize cytosol 83.29 80.8
Bra020688.1-P Field mustard cytosol 80.98 79.95
CDY51056 Canola cytosol 80.72 79.7
TraesCS2B01G038600.1 Wheat cytosol 74.04 79.56
Bra036307.1-P Field mustard cytosol 80.21 79.39
TraesCS2B01G613100.1 Wheat cytosol 80.98 78.95
CDY05664 Canola cytosol 79.95 78.93
TraesCS5D01G488600.1 Wheat cytosol 77.38 76.2
TraesCS5D01G488700.1 Wheat cytosol 77.38 76.2
EES14634 Sorghum cytosol 76.86 75.13
HORVU2Hr1G004170.4 Barley plastid 83.55 75.06
TraesCS1B01G040300.1 Wheat cytosol, mitochondrion 75.84 74.68
TraesCS1A01G032100.1 Wheat cytosol 75.58 74.43
TraesCS1B01G041000.1 Wheat cytosol 75.58 74.43
CDY07114 Canola cytosol 78.41 74.39
PGSC0003DMT400022254 Potato cytosol 74.55 74.36
TraesCS1B01G040000.1 Wheat cytosol, mitochondrion 75.32 74.18
PGSC0003DMT400043447 Potato cytosol 74.29 74.1
TraesCS1B01G040100.1 Wheat cytosol 74.81 73.67
TraesCS1B01G040200.1 Wheat cytosol, mitochondrion 75.84 73.38
TraesCS1A01G032300.1 Wheat cytosol 75.06 73.37
TraesCS1D01G033600.1 Wheat cytosol 75.06 73.18
TraesCS1B01G040500.1 Wheat cytosol 75.06 73.18
HORVU1Hr1G089540.1 Barley mitochondrion 74.81 72.93
TraesCS1D01G033800.1 Wheat cytosol 74.55 72.86
GSMUA_Achr10P... Banana mitochondrion 64.01 72.59
HORVU1Hr1G004830.1 Barley cytosol 73.52 72.04
PGSC0003DMT400022255 Potato cytosol 60.93 71.17
Os07t0214900-00 Rice cytosol 73.26 70.72
PGSC0003DMT400022258 Potato cytosol 71.21 70.66
PGSC0003DMT400043464 Potato cytosol 72.75 70.05
PGSC0003DMT400069814 Potato cytosol 69.67 69.13
TraesCS2D01G530600.1 Wheat cytosol, plastid 84.06 68.41
CDY05666 Canola mitochondrion 70.95 66.03
PGSC0003DMT400004133 Potato cytosol 43.96 45.0
PGSC0003DMT400095725 Potato plastid 40.87 40.15
Protein Annotations
KEGG:00941+2.3.1.74Gene3D:3.40.47.10MapMan:9.2.2.1.1.1ProteinID:AAB67734ProteinID:AAB67734.1ProteinID:AAB67735
ProteinID:AAB67735.1ProteinID:AEN83501ProteinID:AEN83501.1InterPro:Chalcone/stilbene_synth_CInterPro:Chalcone/stilbene_synthase_ASInterPro:Chalcone/stilbene_synthase_N
GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009813
GO:GO:0016210GO:GO:0016740GO:GO:0016746GO:GO:0016747EMBL:HQ659493InterPro:IPR016039
PFAM:PF00195PFAM:PF02797EnsemblPlantsGene:PGSC0003DMG400029620PGSC:PGSC0003DMG400029620EnsemblPlants:PGSC0003DMT400076178PIRSF:PIRSF000451
ScanProsite:PS00441PANTHER:PTHR11877PANTHER:PTHR11877:SF43InterPro:Polyketide_synthase_type-IIIUniProt:Q43163SUPFAM:SSF53901
InterPro:Thiolase-likeEMBL:U47739EMBL:U47740UniParc:UPI000012794DSEG:seg:
Description
CHS1BChalcone synthase 1B [Source:UniProtKB/Swiss-Prot;Acc:Q43163]
Coordinates
chr9:+:58356999..58359082
Molecular Weight (calculated)
42550.7 Da
IEP (calculated)
6.711
GRAVY (calculated)
-0.067
Length
389 amino acids
Sequence
(BLAST)
001: MVTVEEYRKA QRAEGPATIL AIGTSTPSNC VDQSTYPDYY FRITNSEHKT ELKEKFKRMC DKSMIKKRYM HLTEEILKEN PNMCAYMAPS LDARQDIVVV
101: EVPKLGKEAA QKAIKEWGQP KSKITHLVFC TTSGVDMPGC DYQLAKLLGL RPSVKRLMMY QQGCFAGGTV LRLAKDLAEN NKGARVLVVC SEITAVTFRG
201: PSESHLDSLV GQALFGDGAA AIIMGSDPII GVERPLFELV SAAQTLVPDS EGAIDGHLRE VGLTFHLLKD VPGLISKNIE KSLLEAFQPL GISDWNSLFW
301: IAHPGGPAIL DQVELKLGLK QEKLRATREV LSNYGNMSSA CVLFILDEMR KASTKEGLGT TGEGLEWGVL FGFGPGLTVE TVVLHSVAT
Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
Arabidopsis Description
CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.